Trabajos de Toni Gabaldon

Microbiology


  Listando 44 trabajos del autor/autora 38
Lista de trabajos en el área Microbiology
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Article Hybridization and emergence of virulence in opportunistic human yeast pathogens Mixao, Veronica; Gabaldon, Toni YEAST 0749-503X (2018) DOI / 10.1002/yea.3242 Green published, Gold other
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Article Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species Mathers, Thomas C.; Chen, Yazhou; Kaithakottil, Gemy; Legeai, Fabrice; Mugford, Sam T.; Baa-Puyoulet, Patrice; Bretaudeau, Anthony; Clavijo, Bernardo; Colella, Stefano; Collin, Olivier; Dalmay, Tamas; Derrien, Thomas; Feng, Honglin; Gabaldon, Toni; Jordan, GENOME BIOLOGY 1465-6906 (2017) DOI / 10.1186/s13059-016-1145-3 Green published, Gold, Green submitted, Green accepted
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Article Candida pathogens induce protective mitochondria-associated type I interferon signalling and a damage-driven response in vaginal epithelial cells Pekmezovic, Marina; Hovhannisyan, Hrant; Gresnigt, Mark S.; Iracane, Elise; Oliveira-Pacheco, Joao; Siscar-Lewin, Sofia; Seemann, Eric; Qualmann, Britta; Kalkreuter, Till; Mueller, Sylvia; Kamradt, Thomas; Mogavero, Selene; Brunke, Sascha; Butler, Geraldin NATURE MICROBIOLOGY 2058-5276 (2021) DOI / 10.1038/s41564-021-00875-2
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Article Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel Gerdol, Marco; Moreira, Rebeca; Cruz, Fernando; Gomez-Garrido, Jessica; Vlasova, Anna; Rosani, Umberto; Venier, Paola; Naranjo-Ortiz, Miguel A.; Murgarella, Maria; Greco, Samuele; Balseiro, Pablo; Corvelo, Andre; Frias, Leonor; Gut, Marta; Gabaldon, Toni; GENOME BIOLOGY 1465-6906 (2020) DOI / 10.1186/s13059-020-02180-3 Gold, Green published
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Article Evolutionary and functional patterns of shared gene neighbourhood in fungi Marcet-Houben, Marina; Gabaldon, Toni NATURE MICROBIOLOGY 2058-5276 (2019) DOI / 10.1038/s41564-019-0552-0
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Article Utilization of selenocysteine in early-branching fungal phyla Mariotti, Marco; Salinas, Gustavo; Gabaldon, Toni; Gladyshev, Vadim N. NATURE MICROBIOLOGY 2058-5276 (2019) DOI / 10.1038/s41564-018-0354-9 Green accepted
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Article Genomic history of the origin and domestication of common bean unveils its closest sister species Rendon-Anaya, Martha; Montero-Vargas, Josaphat M.; Saburido-Alvarez, Soledad; Vlasova, Anna; Capella-Gutierrez, Salvador; Ordaz-Ortiz, Jose Juan; Mario Aguilar, O.; Vianello-Brondani, Rosana P.; Santalla, Marta; Delaye, Luis; Gabaldon, Toni; Gepts, Paul; W GENOME BIOLOGY 1465-6906 (2017) DOI / 10.1186/s13059-017-1190-6 Gold, Green published
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Article Impact of Homologous Recombination on the Evolution of Prokaryotic Core Genomes Gonzalez-Torres, Pedro; Rodriguez-Mateos, Francisco; Anton, Josefa; Gabaldon, Toni MBIO 2150-7511 (2019) DOI / 10.1128/mbio.02494-18 Green published, Gold
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Article Skin microbiome modulation induced by probiotic solutions Paetzold, Bernhard; Willis, Jesse R.; de Lima, Joao Pereira; Knodlseder, Nastassia; Bruggemann, Holger; Quist, Sven R.; Gabaldon, Toni; Guell, Marc MICROBIOME 2049-2618 (2019) DOI / 10.1186/s40168-019-0709-3 Gold other, Green published
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Review The Quiet and Underappreciated Rise of Drug-Resistant Invasive Fungal Pathogens Arastehfar, Amir; Lass-Floerl, Cornelia; Garcia-Rubio, Rocio; Daneshnia, Farnaz; Ilkit, Macit; Boekhout, Teun; Gabaldon, Toni; Perlin, David S. JOURNAL OF FUNGI (2020) DOI / 10.3390/jof6030138 Gold DOAJ, Green published
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Review The Human Oral Microbiome in Health and Disease: From Sequences to Ecosystems Willis, Jesse R.; Gabaldon, Toni MICROORGANISMS (2020) DOI / 10.3390/microorganisms8020308 Gold, Green published
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Article Citizen science charts two major "stomatotypes" in the oral microbiome of adolescents and reveals links with habits and drinking water composition Willis, Jesse R.; Gonzalez-Torres, Pedro; Pittis, Alexandros A.; Bejarano, Luis A.; Cozzuto, Luca; Andreu-Somavilla, Nuria; Alloza-Trabado, Miriam; Valentin, Antonia; Ksiezopolska, Ewa; Company, Carlos; Onywera, Harris; Montfort, Magda; Hermoso, Antonio; I MICROBIOME 2049-2618 (2018) DOI / 10.1186/s40168-018-0592-3 Green published, Gold
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Article HaploTypo: a variant-calling pipeline for phased genomes Pegueroles, Cinta; Mixao, Veronica; Carrete, Laia; Molina, Manu; Gabaldon, Toni BIOINFORMATICS 1367-4803 (2020) DOI / 10.1093/bioinformatics/btz933 Gold other, Green published
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Review Recent trends in molecular diagnostics of yeast infections: from PCR to NGS Gabaldon, Toni; Arastehfar, A.; Boekhout, T.; Butler, G.; De Cesare, G. Buda; Dolk, E.; Gabaldon, T.; Hafez, A.; Hube, B.; Hagen, F.; Hovhannisyan, H.; Iracane, E.; Kostrzewa, M.; Lackner, M.; Lass-Florl, C.; Llorens, C.; Mixao, V.; Munro, C.; Oliveira-Pac FEMS MICROBIOLOGY REVIEWS 0168-6445 (2019) DOI / 10.1093/femsre/fuz015 Green published, Hybrid
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Article Human albumin enhances the pathogenic potential of Candida glabrata on vaginal epithelial cells Pekmezovic, Marina; Kaune, Ann-Kristin; Austermeier, Sophie; Hitzler, Sophia U. J.; Mogavero, Selene; Hovhannisyan, Hrant; Gabaldon, Toni; Gresnigt, Mark S.; Hube, Bernhard PLOS PATHOGENS 1553-7366 (2021) DOI / 10.1371/journal.ppat.1010037 Gold
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Article Structural characterization of NORAD reveals a stabilizing role of spacers and two new repeat units Chorostecki, Uciel; Saus, Ester; Gabaldon, Toni COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL 2001-0370 (2021) DOI / 10.1016/j.csbj.2021.05.045 Green submitted, Gold, Green published
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Article Diversity of Secondary Metabolism in Aspergillus nidulans Clinical Isolates Drott, M. T.; Bastos, R. W.; Rokas, A.; Ries, L. N. A.; Gabaldon, T.; Goldman, G. H.; Keller, N. P.; Greco, C. MSPHERE (2020) DOI / 10.1128/msphere.00156-20 Gold DOAJ, Green published
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Article Citizen-science based study of the oral microbiome in Cystic fibrosis and matched controls reveals major differences in diversity and abundance of bacterial and fungal species Willis, Jesse R.; Saus, Ester; Iraola-Guzman, Susana; Cabello-Yeves, Elena; Ksiezopolska, Ewa; Cozzuto, Luca; Bejarano, Luis A.; Andreu-Somavilla, Nuria; Alloza-Trabado, Miriam; Blanco, Andrea; Puig-Sola, Anna; Broglio, Elisabetta; Carolis, Carlo; Ponomare JOURNAL OF ORAL MICROBIOLOGY (2021) DOI / 10.1080/20002297.2021.1897328 Gold DOAJ
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Review Hybridization and the origin of new yeast lineages Gabaldon, Toni FEMS YEAST RESEARCH 1567-1356 (2020) DOI / 10.1093/femsyr/foaa040 Hybrid, Green published
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Article Genome Comparisons of Candida glabrata Serial Clinical Isolates Reveal Patterns of Genetic Variation in Infecting Clonal Populations Carrete, Laia; Ksiezopolska, Ewa; Gomez-Molero, Emilia; Angoulvant, Adela; Bader, Oliver; Fairhead, Cecile; Gabaldon, Toni FRONTIERS IN MICROBIOLOGY (2019) DOI / 10.3389/fmicb.2019.00112 Gold DOAJ, Green published
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Article Oral microbiome in down syndrome and its implications on oral health Willis, Jesse R.; Iraola-Guzman, Susana; Saus, Ester; Ksiezopolska, Ewa; Cozzuto, Luca; Bejarano, Luis A.; Andreu-Somavilla, Nuria; Alloza-Trabado, Miriam; Puig-Sola, Anna; Blanco, Andrea; Broglio, Elisabetta; Carolis, Carlo; Hecht, Jochen; Ponomarenko, Ju JOURNAL OF ORAL MICROBIOLOGY (2021) DOI / 10.1080/20002297.2020.1865690 Gold DOAJ, Green published
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Article Differential Expression of Fungal Genes Determines the Lifestyle of Plectosphaerella Strains During Arabidopsis thaliana Colonization Munoz-Barrios, Antonio; Sopena-Torres, Sara; Ramos, Brisa; Lopez, Gemma; del Hierro, Irene; Diaz-Gonzalez, Sandra; Gonzalez-Melendi, Pablo; Melida, Hugo; Fernandez-Calleja, Vanessa; Mixao, Veronica; Martin-Dacal, Marina; Marcet-Houben, Marina; Gabaldon, To MOLECULAR PLANT-MICROBE INTERACTIONS 0894-0282 (2020) DOI / 10.1094/mpmi-03-20-0057-r Hybrid
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Article Characterization of ecologically diverse viruses infecting co-occurring strains of cosmopolitan hyperhalophilic Bacteroidetes Villamor, Judith; Dolores Ramos-Barbero, Maria; Gonzalez-Torres, Pedro; Gabaldon, Toni; Rossello-Mora, Ramon; Meseguer, Inmaculada; Martinez-Garcia, Manuel; Santos, Fernando; Anton, Josefa ISME JOURNAL 1751-7362 (2018) DOI / 10.1038/ismej.2017.175 Green published, Green submitted, Hybrid
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Article EvolClust: automated inference of evolutionary conserved gene clusters in eukaryotes Marcet-Houben, Marina; Gabaldon, Toni BIOINFORMATICS 1367-4803 (2020) DOI / 10.1093/bioinformatics/btz706 Hybrid, Green published, Green submitted
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Article Genome Variation in the Model Halophilic Bacterium Salinibacter ruber Gonzalez-Torres, Pedro; Gabaldon, Toni FRONTIERS IN MICROBIOLOGY (2018) DOI / 10.3389/fmicb.2018.01499 Green published, Gold
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Article Functional Characterization of Clinical Isolates of the Opportunistic Fungal Pathogen Aspergillus nidulans Bastos, Rafael Wesley; Valero, Clara; Silva, Lilian Pereira; Schoen, Taylor; Drott, Milton; Brauer, Veronica; Silva-Rocha, Rafael; Lind, Abigail; Steenwyk, Jacob L.; Rokas, Antonis; Rodrigues, Fernando; Resendiz-Sharpe, Agustin; Lagrou, Katrien; Marcet-Hou MSPHERE (2020) DOI / 10.1128/msphere.00153-20 Gold, Green published, Green submitted
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Article Eicosanoid biosynthesis influences the virulence of Candida parapsilosis Chakraborty, Tanmoy; Thuer, Ernst; Heijink, Marieke; Toth, Renata; Bodai, Laszlo; Vagvolgyi, Csaba; Giera, Martin; Gabaldon, Toni; Gacser, Attila VIRULENCE 2150-5594 (2018) DOI / 10.1080/21505594.2018.1475797 Gold DOAJ, Green published, Green accepted
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Article Misidentification of genome assemblies in public databases: The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications Stavrou, Aimilia A.; Mixao, Veronica; Boekhout, Teun; Gabaldon, Toni YEAST 0749-503X (2018) DOI / 10.1002/yea.3303 Gold other, Green published
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Article A Mouse Model Suggests That Heart Failure and Its Common Comorbidity Sleep Fragmentation Have No Synergistic Impacts on the Gut Microbiome Khannous-Lleiffe, Olfat; Willis, Jesse R.; Saus, Ester; Cabrera-Aguilera, Ignacio; Almendros, Isaac; Farre, Ramon; Gozal, David; Farre, Nuria; Gabaldon, Toni MICROORGANISMS (2021) DOI / 10.3390/microorganisms9030641 Green published, Gold
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Review Origin and Early Evolution of the Eukaryotic Cell Gabaldon, Toni ANNUAL REVIEW OF MICROBIOLOGY, VOL 75, 2021 0066-4227 (2021) DOI / 10.1146/annurev-micro-090817-062213
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Article Transient Mitochondria Dysfunction Confers Fungal Cross-Resistance against Phagocytic Killing and Fluconazole Siscar-Lewin, Sofia; Gabaldon, Toni; Aldejohann, Alexander M.; Kurzai, Oliver; Hube, Bernhard; Brunke, Sascha MBIO 2150-7511 (2021) DOI / 10.1128/mbio.01128-21 Green published, Gold
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Article Gearing up to handle the mosaic nature of life in the quest for orthologs Forslund, Kristoffer; Pereira, Cecile; Capella-Gutierrez, Salvador; Sousa da Silva, Alan; Altenhoff, Adrian; Huerta-Cepas, Jaime; Muffato, Matthieu; Patricio, Mateus; Vandepoele, Klaas; Ebersberger, Ingo; Blake, Judith; Fernandez Breis, Jesualdo Tomas; Boe BIOINFORMATICS 1367-4803 (2018) DOI / 10.1093/bioinformatics/btx542 Hybrid, Green published, Green accepted
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Review Candida parapsilosis: from Genes to the Bedside Toth, Renata; Nosek, Jozef; Mora-Montes, Hector M.; Gabaldon, Toni; Bliss, Joseph M.; Nosanchuk, Joshua D.; Turner, Siobhan A.; Butler, Geraldine; Vasvolgyi, Csaba; Gacser, Attila CLINICAL MICROBIOLOGY REVIEWS 0893-8512 (2019) DOI / 10.1128/cmr.00111-18 Green published, Bronze
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Article Commercial Formulates of Trichoderma Induce Systemic Plant Resistance to Meloidogyne incognita in Tomato and the Effect Is Additive to That of the Mi-1.2 Resistance Gene Pocurull, Miriam; Fullana, Aida M.; Ferro, Miquel; Valero, Pau; Escudero, Nuria; Saus, Ester; Gabaldon, Toni; Javier Sorribas, F. FRONTIERS IN MICROBIOLOGY (2020) DOI / 10.3389/fmicb.2019.03042 Gold DOAJ, Green published
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Article CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies Hovhannisyan, Hrant; Hafez, Ahmed; Llorens, Carlos; Gabaldon, Toni BIOINFORMATICS 1367-4803 (2020) DOI / 10.1093/bioinformatics/btz626 Green published, Gold other
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Article Eukaryotic transporters for hydroxyderivatives of benzoic acid Cillingova, Andrea; Zeman, Igor; Toth, Renata; Nebohacova, Martina; Dunckova, Ivana; Holcova, Maria; Jakubkova, Michaela; Gerecova, Gabriela; Pryszcz, Leszek P.; Tomaska, Lubomir; Gabaldon, Toni; Gacser, Attila; Nosek, Jozef SCIENTIFIC REPORTS 2045-2322 (2017) DOI / 10.1038/s41598-017-09408-6 Gold DOAJ, Green published, Green accepted
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Article The Transcriptional Aftermath in Two Independently Formed Hybrids of the Opportunistic Pathogen Candida orthopsilosis Hovhannisyan, Hrant; Saus, Ester; Ksiezopolska, Ewa; Gabaldon, Toni MSPHERE (2020) DOI / 10.1128/msphere.00282-20 Gold DOAJ, Green published
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Article Investigation of Candida parapsilosis virulence regulatory factors during host-pathogen interaction Toth, Renata; Cabral, Vitor; Thuer, Ernst; Bohner, Flora; Nemeth, Tibor; Papp, Csaba; Nimrichter, Leonardo; Molnar, Gergo; Vagvolgyi, Csaba; Gabaldon, Toni; Nosanchuk, Joshua D.; Gacser, Attila SCIENTIFIC REPORTS 2045-2322 (2018) DOI / 10.1038/s41598-018-19453-4 Green published, Gold, Green accepted
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Article Comparative Genomics Used to Predict Virulence Factors and Metabolic Genes among Monilinia Species Marcet-Houben, Marina; Villarino, Maria; Vilanova, Laura; De Cal, Antonieta; van Kan, Jan A. L.; Usall, Josep; Gabaldon, Toni; Torres, Rosario JOURNAL OF FUNGI (2021) DOI / 10.3390/jof7060464 Gold, Green published
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Article Triazole Evolution of Candida parapsilosis Results in Cross-Resistance to Other Antifungal Drugs, Influences Stress Responses, and Alters Virulence in an Antifungal Drug-Dependent Manner Papp, Csaba; Bohner, Flora; Kocsis, Katica; Varga, Monika; Szekeres, Andras; Bodai, Laszlo; Willis, Jesse R.; Gabaldon, Toni; Toth, Renata; Nosanchuk, Joshua D.; Vagvolgyi, Csaba; Gacser, Attila MSPHERE (2020) DOI / 10.1128/msphere.00821-20 Gold, Green published, Green accepted
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Article SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files Hafez, Ahmed; Futami, Ricardo; Arastehfar, Amir; Daneshnia, Farnaz; Miguel, Ana; Roig, Francisco J.; Soriano, Beatriz; Perez-Sanchez, Jaume; Boekhout, Teun; Gabaldon, Toni; Llorens, Carlos BIOINFORMATICS 1367-4803 (2021) DOI / 10.1093/bioinformatics/btaa903
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Article Regulatory Mechanisms of a Highly Pectinolytic Mutant of Penicillium occitanis and Functional Analysis of a Candidate Gene in the Plant Pathogen Fusarium oxysporum Bravo-Ruiz, Gustavo; Hadj Sassi, Azza; Marcet-Houben, Marina; Di Pietro, Antonio; Gargouri, Ali; Gabaldon, Toni; Roncero, M. Isabel G. FRONTIERS IN MICROBIOLOGY (2017) DOI / 10.3389/fmicb.2017.01627 Gold DOAJ, Green published
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Article Phenotypic Variability in a Coinfection With Three IndependentCandida parapsilosisLineages Gomez-Molero, Emilia; Willis, Jesse R.; Dudakova, Anna; Carrete, Laia; Weig, Michael; Gross, Uwe; Gacser, Attila; Gabaldon, Toni; Bader, Oliver FRONTIERS IN MICROBIOLOGY (2020) DOI / 10.3389/fmicb.2020.01994 Gold DOAJ, Green published
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Article OCT1-a yeast mitochondrial thiolase involved in the 3-oxoadipate pathway Vrzonova, Romana; Toth, Renata; Sivakova, Barbara; Motovska, Anna; Gaplovska-Kysela, Katarina; Barath, Peter; Tomaska, Lubom; Gacser, Attila; Gabaldon, Toni; Nosek, Jozef; Nebohacova, Martina FEMS YEAST RESEARCH 1567-1356 (2021) DOI / 10.1093/femsyr/foab034 Bronze

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