Biology & Biochemistry
Listando 20 trabajos del autor/autora 38
Lista de trabajos en el área Biology & Biochemistry
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375
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COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms
Ostaszewski, Marek; Mazein, Alexander; Gillespie, Marc E.; Kuperstein, Inna; Niarakis, Anna; Hermjakob, Henning; Pico, Alexander R.; Willighagen, Egon L.; Evelo, Chris T.; Hasenauer, Jan; Schreiber, Falk; Draeger, Andreas; Demir, Emek; Wolkenhauer, Olaf; F
SCIENTIFIC DATA
(2020)
DOI /
10.1038/s41597-020-0477-8
Gold DOAJ, Green published
Mentions
143
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0
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5
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0
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Article
CSVS, a crowdsourcing database of the Spanish population genetic variability
Pena-Chilet, Maria; Roldan, Gema; Perez-Florido, Javier; Ortuno, Francisco M.; Carmona, Rosario; Aquino, Virginia; Lopez-Lopez, Daniel; Loucera, Carlos; Fernandez-Rueda, Jose L.; Gallego, Asuncion; Garcia-Garcia, Francisco; Gonzalez-Neira, Anna; Pita, Guil
NUCLEIC ACIDS RESEARCH
0305-1048 (2021)
DOI /
10.1093/nar/gkaa794
Green published, Gold
Mentions
179
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Article
Precision medicine needs pioneering clinical bioinformaticians
Gomez-Lopez, Gonzalo; Dopazo, Joaquin; Cigudosa, Juan C.; Valencia, Alfonso; Al-Shahrour, Fatima
BRIEFINGS IN BIOINFORMATICS
1467-5463 (2019)
DOI /
10.1093/bib/bbx144
Bronze
Mentions
68
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Using mechanistic models for the clinical interpretation of complex genomic variation
Pena-Chilet, Maria; Esteban-Medina, Marina; Falco, Matias M.; Rian, Kinza; Hidalgo, Marta R.; Loucera, Carlos; Dopazo, Joaquin
SCIENTIFIC REPORTS
2045-2322 (2019)
DOI /
10.1038/s41598-019-55454-7
Gold DOAJ, Green published
Mentions
52
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A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways
Garrido-Rodriguez, Martin; Lopez-Lopez, Daniel; Ortuno, Francisco M.; Pena-Chilet, Maria; Munoz, Eduardo; Calzado, Marco A.; Dopazo, Joaquin
PLOS COMPUTATIONAL BIOLOGY
1553-734X (2021)
DOI /
10.1371/journal.pcbi.1008748
Gold DOAJ, Green published
Mentions
58
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Accelerated phosphatidylcholine turnover in macrophages promotes adipose tissue inflammation in obesity
Petkevicius, Kasparas; Virtue, Sam; Bidault, Guillaume; Jenkins, Benjamin; Cubuk, Cankut; Morgantini, Cecilia; Aouadi, Myriam; Dopazo, Joaquin; Serlie, Mireille J.; Koulman, Albert; Vidal-Puig, Antonio
ELIFE
2050-084X (2019)
DOI /
10.7554/elife.47990
Gold DOAJ, Green published
Mentions
57
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Letter
Drug repurposing for COVID-19 using machine learning and mechanistic models of signal transduction circuits related to SARS-CoV-2 infection
Loucera, Carlos; Esteban-Medina, Marina; Rian, Kinza; Falco, Matias M.; Dopazo, Joaquin; Pena-Chilet, Maria
SIGNAL TRANSDUCTION AND TARGETED THERAPY
2095-9907 (2020)
DOI /
10.1038/s41392-020-00417-y
Green published, Gold
Mentions
37
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PyCellBase, an efficient python package for easy retrieval of biological data from heterogeneous sources
Perez-Gil, Daniel; Lopez, Francisco J.; Dopazo, Joaquin; Marin-Garcia, Pablo; Rendon, Augusto; Medina, Ignacio
BMC BIOINFORMATICS
1471-2105 (2019)
DOI /
10.1186/s12859-019-2726-4
Gold DOAJ, Green published
Mentions
30
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HGVA: the Human Genome Variation Archive
Lopez, Javier; Coll, Jacobo; Haimel, Matthias; Kandasamy, Swaathi; Tarraga, Joaquin; Furio-Tari, Pedro; Bari, Wasim; Bleda, Marta; Rueda, Antonio; Graf, Stefan; Rendon, Augusto; Dopazo, Joaquin; Medina, Ignacio
NUCLEIC ACIDS RESEARCH
0305-1048 (2017)
DOI /
10.1093/nar/gkx445
Green published, Gold, Green submitted
Mentions
32
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Reference genome assessment from a population scale perspective: an accurate profile of variability and noise
Carbonell-Caballero, Jose; Amadoz, Alicia; Alonso, Roberto; Hidalgo, Marta R.; Cubuk, Cankut; Conesa, David; Lopez-Quilez, Antonio; Dopazo, Joaquin
BIOINFORMATICS
1367-4803 (2017)
DOI /
10.1093/bioinformatics/btx482
Green published, Gold other
Mentions
26
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A comprehensive database for integrated analysis of omics data in autoimmune diseases
Martorell-Marugan, Jordi; Lopez-Dominguez, Raul; Garcia-Moreno, Adrian; Toro-Dominguez, Daniel; Villatoro-Garcia, Juan Antonio; Barturen, Guillermo; Martin-Gomez, Adoracion; Troule, Kevin; Gomez-Lopez, Gonzalo; Al-Shahrour, Fatima; Gonzalez-Rumayor, Victor
BMC BIOINFORMATICS
1471-2105 (2021)
DOI /
10.1186/s12859-021-04268-4
Green published, Gold
Mentions
6
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Article
ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data
Gonzalez, Sergio; Clavijo, Bernardo; Rivarola, Maximo; Moreno, Patricio; Fernandez, Paula; Dopazo, Joaquin; Paniego, Norma
BMC BIOINFORMATICS
1471-2105 (2017)
DOI /
10.1186/s12859-017-1494-2
Gold DOAJ, Green published
Mentions
16
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Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequences
Ortuno, Francisco M.; Loucera, Carlos; Casimiro-Soriguer, Carlos S.; Lepe, Jose A.; Martinez, Pedro Camacho; Diaz, Laura Merino; De Salazar, Adolfo; Chueca, Natalia; Garcia, Federico; Perez-Florido, Javier; Dopazo, Joaquin
GIGASCIENCE
(2021)
DOI /
10.1093/gigascience/giab078
Mentions
13
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0
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Article
Antibiotic resistance and metabolic profiles as functional biomarkers that accurately predict the geographic origin of city metagenomics samples
Casimiro-Soriguer, Carlos S.; Loucera, Carlos; Perez Florido, Javier; Lopez-Lopez, Daniel; Dopazo, Joaquin
BIOLOGY DIRECT
(2019)
DOI /
10.1186/s13062-019-0246-9
Gold, Green published, Green submitted
Mentions
8
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0
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A new parallel pipeline for DNA methylation analysis of long reads datasets
Olanda, Ricardo; Perez, Mariano; Orduna, Juan M.; Tarraga, Joaqun; Dopazo, Joaquin
BMC BIOINFORMATICS
1471-2105 (2017)
DOI /
10.1186/s12859-017-1574-3
Green published, Gold
Mentions
8
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0
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Exploring the druggable space around the Fanconi anemia pathway using machine learning and mechanistic models
Esteban-Medina, Marina; Pena-Chilet, Maria; Loucera, Carlos; Dopazo, Joaquin
BMC BIOINFORMATICS
1471-2105 (2019)
DOI /
10.1186/s12859-019-2969-0
Green published, Green submitted, Gold
Mentions
10
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VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy
Juanes, Jose M.; Gallego, Asuncion; Tarraga, Joaquin; Chaves, Felipe J.; Marin-Garcia, Pablo; Medina, Ignacio; Arnau, Vicente; Dopazo, Joaquin
BMC BIOINFORMATICS
1471-2105 (2017)
DOI /
10.1186/s12859-017-1837-z
Gold DOAJ, Green published
Mentions
7
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Taxonomic variations in the gut microbiome of gout patients with and without tophi might have a functional impact on urate metabolism
Mendez-Salazar, Eder Orlando; Vazquez-Mellado, Janitzia; Casimiro-Soriguer, Carlos S.; Dopazo, Joaquin; Cubuk, Cankut; Zamudio-Cuevas, Yessica; Francisco-Balderas, Adriana; Martinez-Flores, Karina; Fernandez-Torres, Javier; Lozada-Perez, Carlos; Pineda, Ca
MOLECULAR MEDICINE
1076-1551 (2021)
DOI /
10.1186/s10020-021-00311-5
Gold DOAJ, Green published
Mentions
1
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1
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Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.)
Moschen, Sebastian; Di Rienzo, Julio A.; Higgins, Janet; Tohge, Takayuki; Watanabe, Mutsumi; Gonzalez, Sergio; Rivarola, Myximo; Garcia-Garcia, Francisco; Dopazo, Joaquin; Esteban Hopp, H.; Hoefgen, Rainer; Fernie, Alisdair R.; Paniego, Norma; Fernandez, P
PLANT MOLECULAR BIOLOGY
0167-4412 (2017)
DOI /
10.1007/s11103-017-0625-5
Mentions
3
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Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data
Rian, Kinza; Hidalgo, Marta R.; Cubuk, Cankut; Falco, Matias M.; Loucera, Carlos; Esteban-Medina, Marina; Alamo-Alvarez, Inmaculada; Pena-Chilet, Maria; Dopazo, Joaquin
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
2001-0370 (2021)
DOI /
10.1016/j.csbj.2021.05.022
Green published, Gold
