Biology & Biochemistry
Listando 29 trabajos del autor/autora 38
Lista de trabajos en el área Biology & Biochemistry
Mentions
639
Twitter
5
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1
News
0
Policy
Editorial Material
Reviewer-coerced citation: case report, update on journal policy and suggestions for future prevention
Wren, Jonathan D.; Valencia, Alfonso; Kelso, Janet
BIOINFORMATICS
1367-4803 (2019)
DOI /
10.1093/bioinformatics/btz071
Green published, Gold other
Mentions
375
Twitter
0
Wikipedia
10
News
0
Policy
Article
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms
Ostaszewski, Marek; Mazein, Alexander; Gillespie, Marc E.; Kuperstein, Inna; Niarakis, Anna; Hermjakob, Henning; Pico, Alexander R.; Willighagen, Egon L.; Evelo, Chris T.; Hasenauer, Jan; Schreiber, Falk; Draeger, Andreas; Demir, Emek; Wolkenhauer, Olaf; F
SCIENTIFIC DATA
(2020)
DOI /
10.1038/s41597-020-0477-8
Gold DOAJ, Green published
Mentions
319
Twitter
2
Wikipedia
3
News
0
Policy
Review
Alternative Splicing May Not Be the Key to Proteome Complexity
Tress, Michael L.; Abascal, Federico; Valencia, Alfonso
TRENDS IN BIOCHEMICAL SCIENCES
0968-0004 (2017)
DOI /
10.1016/j.tibs.2016.08.008
Gold other, Green accepted
Mentions
110
Twitter
0
Wikipedia
9
News
0
Policy
Article
Comparison of algorithms for the detection of cancer drivers at subgene resolution
Porta-Pardo, Eduard; Kamburov, Atanas; Tamborero, David; Pons, Tirso; Grases, Daniela; Valencia, Alfonso; Lopez-Bigas, Nuria; Getz, Gad; Godzik, Adam
NATURE METHODS
1548-7091 (2017)
DOI /
10.1038/nmeth.4364
Green accepted
Mentions
62
Twitter
0
Wikipedia
10
News
0
Policy
Article
A molecular hypothesis to explain direct and inverse co-morbidities between Alzheimer's Disease, Glioblastoma and Lung cancer
Sanchez-Valle, Jon; Tejero, Hector; Ibanez, Kristina; Luis Portero, Jose; Krallinger, Martin; Al-Shahrour, Fatima; Tabares-Seisdedos, Rafael; Baudot, Anais; Valencia, Alfonso
SCIENTIFIC REPORTS
2045-2322 (2017)
DOI /
10.1038/s41598-017-04400-6
Green published, Gold
Mentions
142
Twitter
0
Wikipedia
1
News
0
Policy
Article
Pathway and network analysis of more than 2500 whole cancer genomes
Reyna, Matthew A.; Haan, David; Paczkowska, Marta; Verbeke, Lieven P. C.; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S.; Pedersen, Jakob Sko
NATURE COMMUNICATIONS
(2020)
DOI /
10.1038/s41467-020-14367-0
Green published, Green submitted, Gold
Mentions
179
Twitter
0
Wikipedia
0
News
0
Policy
Article
Precision medicine needs pioneering clinical bioinformaticians
Gomez-Lopez, Gonzalo; Dopazo, Joaquin; Cigudosa, Juan C.; Valencia, Alfonso; Al-Shahrour, Fatima
BRIEFINGS IN BIOINFORMATICS
1467-5463 (2019)
DOI /
10.1093/bib/bbx144
Bronze
Mentions
109
Twitter
0
Wikipedia
0
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0
Policy
Letter
Most Alternative Isoforms Are Not Functionally Important
Tress, Michael L.; Abascal, Federico; Valencia, Alfonso
TRENDS IN BIOCHEMICAL SCIENCES
0968-0004 (2017)
DOI /
10.1016/j.tibs.2017.04.002
Green accepted, Gold other
Mentions
13
Twitter
0
Wikipedia
9
News
0
Policy
Article
LimTox: a web tool for applied text mining of adverse event and toxicity associations of compounds, drugs and genes
Canada, Andres; Capella-Gutierrez, Salvador; Rabal, Obdulia; Oyarzabal, Julen; Valencia, Alfonso; Krallinger, Martin
NUCLEIC ACIDS RESEARCH
0305-1048 (2017)
DOI /
10.1093/nar/gkx462
Gold DOAJ, Green published
Mentions
61
Twitter
0
Wikipedia
0
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0
Policy
Article
Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships
Sanchez-Valle, Jon; Tejero, Hector; Maria Fernandez, Jose; Juan, David; Urda-Garcia, Beatriz; Capella-Gutierrez, Salvador; Al-Shahrour, Fatima; Tabares-Seisdedos, Rafael; Baudot, Anais; Pancaldi, Vera; Valencia, Alfonso
NATURE COMMUNICATIONS
(2020)
DOI /
10.1038/s41467-020-16540-x
Green published, Gold
Mentions
63
Twitter
0
Wikipedia
1
News
0
Policy
Article
Automatic identification of informative regions with epigenomic changes associated to hematopoiesis
Carrillo-de-Santa-Pau, Enrique; Juan, David; Pancaldi, Vera; Were, Felipe; Martin-Subero, Ignacio; Rico, Daniel; Valencia, Alfonso
NUCLEIC ACIDS RESEARCH
0305-1048 (2017)
DOI /
10.1093/nar/gkx618
Gold DOAJ, Green published
Mentions
50
Twitter
0
Wikipedia
0
News
0
Policy
Review
Big data analytics for personalized medicine
Cirillo, Davide; Valencia, Alfonso
CURRENT OPINION IN BIOTECHNOLOGY
0958-1669 (2019)
DOI /
10.1016/j.copbio.2019.03.004
Gold other
Mentions
59
Twitter
0
Wikipedia
0
News
0
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Article
vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer
Perales-Paton, Javier; Di Domenico, Tomas; Fustero-Torre, Coral; Pineiro-Yanez, Elena; Carretero-Puche, Carlos; Tejero, Hector; Valencia, Alfonso; Gomez-Lopez, Gonzalo; Al-Shahrour, Fatima
BIOINFORMATICS
1367-4803 (2019)
DOI /
10.1093/bioinformatics/btz465
Gold other, Green published
Mentions
45
Twitter
1
Wikipedia
0
News
0
Policy
Article
APPRIS 2017: principal isoforms for multiple gene sets
Rodriguez, Jose Manuel; Rodriguez-Rivas, Juan; Di Domenico, Tomas; Vazquez, Jesus; Valencia, Alfonso; Tress, Michael L.
NUCLEIC ACIDS RESEARCH
0305-1048 (2018)
DOI /
10.1093/nar/gkx997
Green published, Green submitted, Gold
Mentions
32
Twitter
0
Wikipedia
0
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0
Policy
Article
Unraveling the molecular basis of host cell receptor usage in SARS-CoV-2 and other human pathogenic beta-CoVs
Pontes, Camila; Ruiz-Serra, Victoria; Lepore, Rosalba; Valencia, Alfonso
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
2001-0370 (2021)
DOI /
10.1016/j.csbj.2021.01.006
Green published, Gold, Green submitted
Mentions
37
Twitter
0
Wikipedia
0
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0
Policy
Article
A user guide for the online exploration and visualization of PCAWG data
Goldman, Mary J.; Zhang, Junjun; Fonseca, Nuno A.; Cortes-Ciriano, Isidro; Xiang, Qian; Craft, Brian; Pineiro-Yanez, Elena; O'Connor, Brian D.; Bazant, Wojciech; Barrera, Elisabet; Munoz-Pomer, Alfonso; Petryszak, Robert; Fuellgrabe, Anja; Al-Shahrour, Fat
NATURE COMMUNICATIONS
(2020)
DOI /
10.1038/s41467-020-16785-6
Gold DOAJ, Green published
Mentions
38
Twitter
0
Wikipedia
0
News
0
Policy
Review
Epigenetic and Transcriptional Variability Shape Phenotypic Plasticity
Ecker, Simone; Pancaldi, Vera; Valencia, Alfonso; Beck, Stephan; Paul, Dirk S.
BIOESSAYS
0265-9247 (2018)
DOI /
10.1002/bies.201700148
Gold other, Green published
Mentions
12
Twitter
0
Wikipedia
1
News
0
Policy
Article
Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer: New Insights from Matrix Factorization
Greco, Alessandro; Sanchez Valle, Jon; Pancaldi, Vera; Baudot, Anais; Barillot, Emmanuel; Caselle, Michele; Valencia, Alfonso; Zinovyev, Andrei; Cantini, Laura
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
1661-6596 (2019)
DOI /
10.3390/ijms20133114
Green published, Green submitted, Gold
Mentions
17
Twitter
0
Wikipedia
0
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0
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Article
Germline mutations in the spindle assembly checkpoint genes BUB1 and BUB3 are infrequent in familial colorectal cancer and polyposis
Mur, Pilar; de Voer, Richarda M.; Olivera-Salguero, Ruben; Rodriguez-Perales, Sandra; Pons, Tirso; Setien, Fernando; Aiza, Gemma; Valdes-Mas, Rafael; Bertini, Angelo; Pineda, Marta; Vreede, Lilian; Navarro, Matilde; Iglesias, Silvia; Gonzalez, Sara; Brunet
MOLECULAR CANCER
(2018)
DOI /
10.1186/s12943-018-0762-8
Green published, Gold
Mentions
36
Twitter
0
Wikipedia
0
News
0
Policy
Review
Understanding oncogenicity of cancer driver genes and mutations in the cancer genomics era
Porta-Pardo, Eduard; Valencia, Alfonso; Godzik, Adam
FEBS LETTERS
0014-5793 (2020)
DOI /
10.1002/1873-3468.13781
Gold other, Green accepted
Mentions
24
Twitter
0
Wikipedia
0
News
0
Policy
Article
BIOLITMAP: a web-based geolocated, temporal and thematic visualization of the evolution of bioinformatics publications
Bazaga, Adrian; Valencia, Alfonso; Rementeria, Maria-Jose
BIOINFORMATICS
1367-4803 (2019)
DOI /
10.1093/bioinformatics/bty967
Green published, Gold other
Mentions
20
Twitter
0
Wikipedia
0
News
0
Policy
Article
STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells
Richart, Laia; Lapi, Eleonora; Pancaldi, Vera; Cuenca-Ardura, Mirabai; Carrillo-de-Santa Pau, Enrique; Madrid-Mencia, Miguel; Neyret-Kahn, Helene; Radvanyi, Francois; Antonio Rodriguez, Juan; Cuartero, Yasmina; Serra, Francois; Le Dily, Francois; Valencia,
NUCLEIC ACIDS RESEARCH
0305-1048 (2021)
DOI /
10.1093/nar/gkab864
Green published, Gold
Mentions
12
Twitter
0
Wikipedia
0
News
0
Policy
Article
CImbinator: a web-based tool for drug synergy analysis in small- and large-scale datasets
Flobak, Asmund; Vazquez, Miguel; Laegreid, Astrid; Valencia, Alfonso
BIOINFORMATICS
1367-4803 (2017)
DOI /
10.1093/bioinformatics/btx161
Green published, Gold other
Mentions
10
Twitter
0
Wikipedia
0
News
0
Policy
Article
Assessing the accuracy of contact and distance predictions in CASP14
Ruiz-Serra, Victoria; Pontes, Camila; Milanetti, Edoardo; Kryshtafovych, Andriy; Lepore, Rosalba; Valencia, Alfonso
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
0887-3585 (2021)
DOI /
10.1002/prot.26248
Green published
Mentions
10
Twitter
0
Wikipedia
0
News
0
Policy
Letter
On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models
Ponce-de-Leon, Miguel; Apaolaza, Inigo; Valencia, Alfonso; Planes, Francisco J.
BIOINFORMATICS
1367-4803 (2020)
DOI /
10.1093/bioinformatics/btz832
Mentions
18
Twitter
0
Wikipedia
0
News
0
Policy
Article
ChiPPI: a novel method for mapping chimeric protein-protein interactions uncovers selection principles of protein fusion events in cancer
Frenkel-Morgenstern, Milana; Gorohovski, Alessandro; Tagore, Somnath; Sekar, Vaishnovi; Vazquez, Miguel; Valencia, Alfonso
NUCLEIC ACIDS RESEARCH
0305-1048 (2017)
DOI /
10.1093/nar/gkx423
Gold DOAJ, Green published
Mentions
11
Twitter
0
Wikipedia
0
News
0
Policy
Article
Patient Dossier: Healthcare queries over distributed resources
Vazquez, Miguel; Valencia, Alfonso
PLOS COMPUTATIONAL BIOLOGY
1553-734X (2019)
DOI /
10.1371/journal.pcbi.1007291
Gold DOAJ, Green published
Mentions
5
Twitter
0
Wikipedia
0
News
0
Policy
Article
Chromatin network markers of leukemia
Malod-Dognin, N.; Valencia, A.; Przulj, N.
BIOINFORMATICS
1367-4803 (2020)
DOI /
10.1093/bioinformatics/btaa445
Green published, Hybrid
Mentions
4
Twitter
0
Wikipedia
0
News
0
Policy
Editorial Material
ECCB2020: the 19th European Conference on Computational Biology
Capella-Gutierrez, Salvador; Alloza, Eva; Gallastegui, Edurne; Kavakiotis, Ioannis; Harrow, Jen; Langtry, Alberto; Valencia, Alfonso
BIOINFORMATICS
1367-4803 (2020)
DOI /
10.1093/bioinformatics/btaa979
