Biology & Biochemistry
Listando 20 trabajos del autor/autora 38
Lista de trabajos en el área Biology & Biochemistry
Mentions
284
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0
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11
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Article
3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing
Nguyen, Huy Q.; Chattoraj, Shyamtanu; Castillo, David; Nguyen, Son C.; Nir, Guy; Lioutas, Antonios; Hershberg, Elliot A.; Martins, Nuno M. C.; Reginato, Paul L.; Hannan, Mohammed; Beliveau, Brian J.; Church, George M.; Daugharthy, Evan R.; Marti-Renom, Mar
NATURE METHODS
1548-7091 (2020)
DOI /
10.1038/s41592-020-0890-0
Green accepted
Mentions
207
Twitter
1
Wikipedia
10
News
0
Policy
Article
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia
Beekman, Renee; Chapaprieta, Vicente; Russinol, Nuria; Vilarrasa-Blasi, Roser; Verdaguer-Dot, Nuria; Martens, Joost H. A.; Duran-Ferrer, Marti; Kulis, Marta; Serra, Francois; Javierre, Biola M.; Wingett, Steven W.; Clot, Guillem; Queiros, Ana C.; Castellan
NATURE MEDICINE
1078-8956 (2018)
DOI /
10.1038/s41591-018-0028-4
Green accepted
Mentions
27
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0
Wikipedia
9
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0
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Article
Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae
Trussart, Marie; Yus, Eva; Martinez, Sira; Bau, Davide; Tahara, Yuhei O.; Pengo, Thomas; Widjaja, Michael; Kretschmer, Simon; Swoger, Jim; Djordjevic, Steven; Turnbull, Lynne; Whitchurch, Cynthia; Miyata, Makoto; Marti-Renom, Marc A.; Lluch-Senar, Maria; S
NATURE COMMUNICATIONS
(2017)
DOI /
10.1038/ncomms14665
Green submitted, Green published, Gold
Mentions
51
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0
Wikipedia
5
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0
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Article
Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization
Kojic, Aleksandar; Cuadrado, Ana; De Koninck, Magali; Gimenez-Llorente, Daniel; Rodriguez-Corsino, Miriam; Gomez-Lopez, Gonzalo; Le Dily, Francois; Marti-Renom, Marc A.; Losada, Ana
NATURE STRUCTURAL & MOLECULAR BIOLOGY
1545-9993 (2018)
DOI /
10.1038/s41594-018-0070-4
Green accepted, Green submitted
Mentions
138
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0
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0
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0
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Article
Three-dimensional genome organization via triplex-forming RNAs
Farabella, Irene; Di Stefano, Marco; Soler-Vila, Paula; Marti-Marimon, Maria; Marti-Renom, Marc A.
NATURE STRUCTURAL & MOLECULAR BIOLOGY
1545-9993 (2021)
DOI /
10.1038/s41594-021-00678-3
Mentions
140
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0
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Editorial Material
Parallel sequencing lives, or what makes large sequencing projects successful
Quilez, Javier; Vidal, Enrique; Le Dily, Francois; Serra, Francois; Cuartero, Yasmina; Stadhouders, Ralph; Graf, Thomas; Marti-Renom, Marc A.; Beato, Miguel; Filion, Guillaume
GIGASCIENCE
2047-217X (2017)
DOI /
10.1093/gigascience/gix100
Green submitted, Gold, Green published
Mentions
95
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0
Wikipedia
1
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0
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Article
Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs
Di Stefano, Marco; Stadhouders, Ralph; Farabella, Irene; Castillo, David; Serra, Francois; Graf, Thomas; Marti-Renom, Marc A.
NATURE COMMUNICATIONS
(2020)
DOI /
10.1038/s41467-020-16396-1
Green published, Gold
Mentions
110
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0
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0
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0
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Article
4D Genome Rewiring during Oncogene-Induced and Replicative Senescence
Sati, Satish; Bonev, Boyan; Szabo, Quentin; Jost, Daniel; Bensadoun, Paul; Serra, Francois; Loubiere, Vincent; Papadopoulos, Giorgio Lucio; Rivera-Mulia, Juan-Carlos; Fritsch, Lauriane; Bouret, Pauline; Castillo, David; Gelpi, Josep L., I; Orozco, Modesto;
MOLECULAR CELL
1097-2765 (2020)
DOI /
10.1016/j.molcel.2020.03.007
Green published, Gold other, Green accepted
Mentions
65
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0
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0
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0
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Article
Single-cell absolute contact probability detection reveals chromosomes are organized by multiple low-frequency yet specific interactions
Cattoni, Diego I.; Gizzi, Andres M. Cardozo; Georgieva, Mariya; Di Stefano, Marco; Valeri, Alessandro; Chamousset, Delphine; Houbron, Christophe; Dejardin, Stephanie; Fiche, Jean-Bernard; Gonzalez, Inma; Chang, Jia-Ming; Sexton, Thomas; Marti-Renom, Marc A
NATURE COMMUNICATIONS
(2017)
DOI /
10.1038/s41467-017-01962-x
Green submitted, Green published, Gold
Mentions
39
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1
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0
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0
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Article
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors
Serra, Francois; Bau, Davide; Goodstadt, Mike; Castillo, David; Filion, Guillaume; Marti-Renom, Marc A.
PLOS COMPUTATIONAL BIOLOGY
1553-734X (2017)
DOI /
10.1371/journal.pcbi.1005665
Green submitted, Gold, Green published
Mentions
31
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0
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0
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0
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Article
Dynamics of genome architecture and chromatin function during human B cell differentiation and neoplastic transformation
Vilarrasa-Blasi, Roser; Soler-Vila, Paula; Verdaguer-Dot, Nuria; Russinol, Nuria; Di Stefano, Marco; Chapaprieta, Vicente; Clot, Guillem; Farabella, Irene; Cusco, Pol; Kulis, Marta; Agirre, Xabier; Prosper, Felipe; Beekman, Renee; Bea, Silvia; Colomer, Dol
NATURE COMMUNICATIONS
(2021)
DOI /
10.1038/s41467-020-20849-y
Green submitted, Green published, Gold
Mentions
22
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0
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0
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0
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Article
Hierarchical chromatin organization detected by TADpole
Soler-Vila, Paula; Cusco, Pol; Farabella, Irene; Di Stefano, Marco; Marti-Renom, Marc A.
NUCLEIC ACIDS RESEARCH
0305-1048 (2020)
DOI /
10.1093/nar/gkaa087
Gold DOAJ, Green published
Mentions
18
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0
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0
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0
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Review
Communicating Genome Architecture: Biovisualization of the Genome, from Data Analysis and Hypothesis Generation to Communication and Learning
Goodstadt, Mike N.; Marti-Renom, Marc A.
JOURNAL OF MOLECULAR BIOLOGY
0022-2836 (2019)
DOI /
10.1016/j.jmb.2018.11.008
Green accepted
Mentions
18
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0
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0
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0
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Article
Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform
Sandoval-Velasco, Marcela; Antonio Rodriguez, Juan; Estrada, Cynthia Perez; Zhang, Guojie; Aiden, Erez Lieberman; Marti-Renom, Marc A.; Gilbert, M. Thomas P.; Smith, Oliver
GIGASCIENCE
2047-217X (2020)
DOI /
10.1093/gigascience/giaa087
Gold DOAJ, Green published
Mentions
30
Twitter
0
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0
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0
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Article
OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes
Vidal, Enrique; Le Dily, Francois; Quilez, Javier; Stadhouders, Ralph; Cuartero, Yasmina; Graf, Thomas; Marti-Renom, Marc A.; Beato, Miguel; Filion, Guillaume J.
NUCLEIC ACIDS RESEARCH
0305-1048 (2018)
DOI /
10.1093/nar/gky064
Gold DOAJ, Green published
Mentions
17
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0
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0
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0
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Review
Challenges for visualizing three-dimensional data in genomic browsers
Goodstadt, Mike; Marti-Renom, Marc A.
FEBS LETTERS
0014-5793 (2017)
DOI /
10.1002/1873-3468.12778
Green published, Gold other
Mentions
20
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0
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0
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0
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Article
STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells
Richart, Laia; Lapi, Eleonora; Pancaldi, Vera; Cuenca-Ardura, Mirabai; Carrillo-de-Santa Pau, Enrique; Madrid-Mencia, Miguel; Neyret-Kahn, Helene; Radvanyi, Francois; Antonio Rodriguez, Juan; Cuartero, Yasmina; Serra, Francois; Le Dily, Francois; Valencia,
NUCLEIC ACIDS RESEARCH
0305-1048 (2021)
DOI /
10.1093/nar/gkab864
Green published, Gold
Mentions
17
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0
Wikipedia
0
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0
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Article
Polymer modelling unveils the roles of heterochromatin and nucleolar organizing regions in shaping 3D genome organization in Arabidopsis thaliana
Di Stefano, Marco; Nutzmann, Hans-Wilhelm; Marti-Renom, Marc A.; Jost, Daniel
NUCLEIC ACIDS RESEARCH
0305-1048 (2021)
DOI /
10.1093/nar/gkaa1275
Gold DOAJ, Green published
Mentions
18
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0
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0
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0
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Article
TADs enriched in histone H1.2 strongly overlap with the B compartment, inaccessible chromatin, and AT-rich Giemsa bands
Serna-Pujol, Nuria; Salinas-Pena, Monica; Mugianesi, Francesca; Lopez-Anguita, Natalia; Torrent-Llagostera, Francesc; Izquierdo-Bouldstridge, Andrea; Marti-Renom, Marc A.; Jordan, Albert
FEBS JOURNAL
1742-464X (2020)
DOI /
10.1111/febs.15549
Mentions
4
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0
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0
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0
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Editorial Material
Benchmarking experiments with polymer modeling
Marti-Renom, Marc A.
NATURE METHODS
1548-7091 (2021)
DOI /
10.1038/s41592-021-01134-2
