Microbiology
Listando 24 trabajos del autor/autora 38
Lista de trabajos en el área Microbiology
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Review
Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues
Meehan, Conor J.; Goig, Galo A.; Kohl, Thomas A.; Verboven, Lennert; Dippenaar, Anzaan; Ezewudo, Matthew; Farhat, Maha R.; Guthrie, Jennifer L.; Laukens, Kris; Miotto, Paolo; Ofori-Anyinam, Boatema; Dreyer, Viola; Supply, Philip; Suresh, Anita; Utpatel, Ch
NATURE REVIEWS MICROBIOLOGY
1740-1526 (2019)
DOI /
10.1038/s41579-019-0214-5
Green submitted, Green accepted
Mentions
79
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0
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3
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0
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Article
High-resolution mapping of tuberculosis transmission: Whole genome sequencing and phylogenetic modelling of a cohort from Valencia Region, Spain
Xu, Yuanwei; Cancino-Munoz, Irving; Torres-Puente, Manuela; Villamayor, Luis M.; Borras, Rafael; Borras-Manez, Maria; Bosque, Montserrat; Camarena, Juan J.; Colomer-Roig, Ester; Colomina, Javier; Escribano, Isabel; Esparcia-Rodriguez, Oscar; Gil-Brusola, A
PLOS MEDICINE
1549-1277 (2019)
DOI /
10.1371/journal.pmed.1002961
Green published, Gold
Mentions
107
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0
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0
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Article
Mycobacterium tuberculosis clinical isolates carry mutational signatures of host immune environments
Liu, Qingyun; Wei, Jianhao; Li, Yawei; Wang, Mei; Su, Jun; Lu, Yonghui; Lopez, Mariana G.; Qian, Xueqin; Zhu, Zhaoqin; Wang, Haiying; Gan, Mingyun; Jiang, Qi; Fu, Yun-Xin; Takiff, Howard; Comas, Inaki; Li, Feng; Lu, Xuemei; Fortune, Sarah M.; Gao, Qian
SCIENCE ADVANCES
2375-2548 (2020)
DOI /
10.1126/sciadv.aba4901
Gold DOAJ, Green published
Mentions
79
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0
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1
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Article
Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex
Chiner-Oms, A.; Sanchez-Buso, L.; Corander, J.; Gagneux, S.; Harris, S. R.; Young, D.; Gonzalez-Candelas, F.; Comas, I.
SCIENCE ADVANCES
2375-2548 (2019)
DOI /
10.1126/sciadv.aaw3307
Green accepted, Green published, Gold, Green submitted
Mentions
49
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0
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0
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Article
Mycobacterium tuberculosis associated with severe tuberculosis evades cytosolic surveillance systems and modulates IL-1 beta production
Sousa, Jeremy; Ca, Baltazar; Maceiras, Ana Raquel; Simoes-Costa, Luisa; Fonseca, Kaori L.; Fernandes, Ana Isabel; Ramos, Angelica; Carvalho, Teresa; Barros, Leandro; Magalhaes, Carlos; Chiner-Oms, Alvaro; Machado, Henrique; Veiga, Maria Isabel; Singh, Albe
NATURE COMMUNICATIONS
(2020)
DOI /
10.1038/s41467-020-15832-6
Gold DOAJ, Green published, Green accepted
Mentions
49
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5
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0
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Article
Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex
Chiner-Oms, Alvaro; Berney, Michael; Boinett, Christine; Gonzalez-Candelas, Fernando; Young, Douglas B.; Gagneux, Sebastien; Jacobs, William R., Jr.; Parkhill, Julian; Cortes, Teresa; Comas, Inaki
NATURE COMMUNICATIONS
(2019)
DOI /
10.1038/s41467-019-11948-6
Green published, Green accepted, Gold
Mentions
54
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0
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0
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Article
Cryptic Resistance Mutations Associated With Misdiagnoses of Multidrug-Resistant Tuberculosis
Cancino-Munoz, Irving; Moreno-Molina, Miguel; Furio, Victoria; Goig, Galo A.; Torres-Puente, Manuela; Chiner-Oms, Alvaro; Villamayor, Luis M.; Sanz, Francisco; Remedio Guna-Serrano, Maria; Comas, Inaki
JOURNAL OF INFECTIOUS DISEASES
0022-1899 (2019)
DOI /
10.1093/infdis/jiz104
Green submitted, Green published, Hybrid
Mentions
43
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0
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0
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Article
Proper Assignation of Reactivation in a COVID-19 Recurrence Initially Interpreted as a Reinfection
Perez-Lago, Laura; Martinez-Lozano, Helena; Pajares Diaz, Jose Antonio; Diaz Gomez, Arantxa; Machado, Marina; Sola-Campoy, Pedro J.; Herranz, Marta; Buenestado-Serrano, Sergio; Valerio, Maricela; Olmedo, Maria; Andres Zayas, Cristina; Comas, Inaki; Gonzale
JOURNAL OF INFECTIOUS DISEASES
0022-1899 (2021)
DOI /
10.1093/infdis/jiab302
Bronze, Green published
Mentions
34
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0
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1
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Article
Evolutionary and Phenotypic Characterization of Two Spike Mutations in European Lineage 20E of SARS-CoV-2
Ruiz-Rodriguez, Paula; Frances-Gomez, Clara; Chiner-Oms, Alvaro; Lopez, Mariana G.; Jimenez-Serrano, Santiago; Cancino-Munoz, Irving; Ruiz-Hueso, Paula; Torres-Puente, Manuela; Bracho, Maria Alma; D'Auria, Giuseppe; Martinez-Priego, Llucia; Guerreiro, Manu
MBIO
(2021)
DOI /
10.1128/mbio.02315-21
Mentions
40
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0
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0
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0
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Article
Towards next-generation diagnostics for tuberculosis: identification of novel molecular targets by large-scale comparative genomics
Goig, Galo A.; Torres-Puente, Manuela; Mariner-Llicer, Carla; Villamayor, Luis M.; Chiner-Oms, Alvaro; Gil-Brusola, Ana; Borras, Rafael; Comas Espadas, Inaki
BIOINFORMATICS
1367-4803 (2020)
DOI /
10.1093/bioinformatics/btz729
Green published, Green submitted, Hybrid
Mentions
29
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0
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0
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Article
Development and application of affordable SNP typing approaches to genotype Mycobacterium tuberculosis complex strains in low and high burden countries
Cancino-Munoz, Irving; Gil-Brusola, Ana; Torres-Puente, Manuela; Mariner-Llicer, Carla; Dogba, John; Akinseye, Victor; Adesokan, Kehinde; Kwaghe, Ayi; Ejeh, Francis; Cadmus, Simeon; Comas, Inaki
SCIENTIFIC REPORTS
2045-2322 (2019)
DOI /
10.1038/s41598-019-51326-2
Green published, Gold
Mentions
25
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0
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0
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0
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Article
Tuberculosis in Liberia: high multidrug-resistance burden, transmission and diversity modelled by multiple importation events
Lopez, Mariana G.; Dogba, John B.; Torres-Puente, Manuela; Goig, Galo A.; Moreno-Molina, Miguel; Villamayor, Luis M.; Cadmus, Simeon; Comas, Inaki
MICROBIAL GENOMICS
2057-5858 (2020)
DOI /
10.1099/mgen.0.000325
Green published, Gold
Mentions
27
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0
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0
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Article
Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase
Ezewudo, Matthew; Borens, Amanda; Chiner-Oms, Alvaro; Miotto, Paolo; Chindelevitch, Leonid; Starks, Angela M.; Hanna, Debra; Liwskil, Richard; Zignol, Matteo; Gilpin, Christopher; Niemann, Stefan; Kohl, Thomas Andreas; Warren, Robin M.; Crook, Derrick; Gag
SCIENTIFIC REPORTS
2045-2322 (2018)
DOI /
10.1038/s41598-018-33731-1
Gold DOAJ, Green published, Green accepted
Mentions
20
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0
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0
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0
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Article
The Sputum Microbiome in Pulmonary Tuberculosis and Its Association With Disease Manifestations: A Cross-Sectional Study
Ticlla, Monica R.; Hella, Jerry; Hiza, Hellen; Sasamalo, Mohamed; Mhimbira, Francis; Rutaihwa, Liliana K.; Droz, Sara; Schaller, Sarah; Reither, Klaus; Hilty, Markus; Comas, Inaki; Beisel, Christian; Schmid, Christoph D.; Fenner, Lukas; Gagneux, Sebastien
FRONTIERS IN MICROBIOLOGY
(2021)
DOI /
10.3389/fmicb.2021.633396
Green published, Gold
Mentions
21
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0
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0
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Article
Gene expression models based on a reference laboratory strain are poor predictors of Mycobacterium tuberculosis complex transcriptional diversity
Chiner-Oms, Alvaro; Gonzalez-Candelas, Fernando; Comas, Inaki
SCIENTIFIC REPORTS
2045-2322 (2018)
DOI /
10.1038/s41598-018-22237-5
Green submitted, Gold, Green published
Mentions
15
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0
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0
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Article
Whole-genome sequence analysis of the Mycobacterium avium complex and proposal of the transfer of Mycobacterium yongonense to Mycobacterium intracellulare subsp yongonense subsp nov.
Castejon, Maria; Carmen Menendez, Maria; Comas, Inaki; Vicente, Ana; Garcia, Maria J.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
1466-5026 (2018)
DOI /
10.1099/ijsem.0.002767
Bronze
Mentions
21
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0
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0
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Article
Heterogeneous Streptomycin Resistance Level Among Mycobacterium tuberculosis Strains From the Same Transmission Cluster
Rocha, Deisy M. G. C.; Magalhaes, Carlos; Ca, Baltazar; Ramos, Angelica; Carvalho, Teresa; Comas, Inaki; Guimaraes, Joao Tiago; Bastos, Helder Novais; Saraiva, Margarida; Osorio, Nuno S.
FRONTIERS IN MICROBIOLOGY
(2021)
DOI /
10.3389/fmicb.2021.659545
Gold, Green published
Mentions
3
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1
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0
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0
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Article
The effect size of type 2 diabetes mellitus on tuberculosis drug resistance and adverse treatment outcomes
Monserrat Perez-Navarro, Lucia; Restrepo, Blanca I.; Javier Fuentes-Dominguez, Francisco; Duggirala, Ravindranath; Morales-Romero, Jaime; Carlos Lopez-Alvarenga, Juan; Comas, Inaki; Zenteno-Cuevas, Roberto
TUBERCULOSIS
1472-9792 (2017)
DOI /
10.1016/j.tube.2017.01.006
Mentions
11
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0
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0
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Article
In-Depth Characterization and Functional Analysis of Clonal Variants in a Mycobacterium tuberculosis Strain Prone to Microevolution
Navarro, Yurena; Perez-Lago, Laura; Herranz, Marta; Sierra, Olalla; Comas, Inaki; Sicilia, Javier; Bouza, Emilio; Garcia de Viedma, Dario
FRONTIERS IN MICROBIOLOGY
(2017)
DOI /
10.3389/fmicb.2017.00694
Gold DOAJ, Green published
Mentions
2
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1
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0
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0
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Article
Mycobacterium tuberculosis Acquires Limited Genetic Diversity in Prolonged Infections, Reactivations and Transmissions Involving Multiple Hosts
Herranz, Marta; Pole, Ilva; Ozere, Iveta; Chiner-Oms, Alvaro; Martinez-Lirola, Miguel; Perez-Garcia, Felipe; Gijon, Paloma; Ruiz Serrano, Maria Jesus; Clotet Romero, Laura; Cuevas, Oscar; Comas, Inaki; Bouza, Emilio; Perez-Lago, Laura; Garcia-de-Viedma, Da
FRONTIERS IN MICROBIOLOGY
(2018)
DOI /
10.3389/fmicb.2017.02661
Gold DOAJ, Green published
Mentions
5
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0
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0
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Article
Overlapping of Independent SARS-CoV-2 Nosocomial Transmissions in a Complex Outbreak
Perez-Lago, Laura; Martinez-Lozano, Helena; Pajares-Diaz, Jose Antonio; Diaz-Gomez, Arantxa; Machado, Marina; Sola-Campoy, Pedro J.; Herranz, Marta; Valerio, Maricela; Olmedo, Maria; Suarez-Gonzalez, Julia; Quesada-Cubo, Victor; Gomez-Ruiz, Maria del Mar;
MSPHERE
(2021)
DOI /
10.1128/msphere.00389-21
Mentions
3
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0
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0
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Article
Whole genomic sequencing based genotyping reveals a specific X3 sublineage restricted to Mexico and related with multidrug resistance
Jimenez-Ruano, Ana Cristina; Madrazo-Moya, Carlos Francisco; Cancino-Munoz, Irving; Mejia-Ponce, Paulina M.; Licona-Cassani, Cuauhtemoc; Comas, Inaki; Muniz-Salazar, Raquel; Zenteno-Cuevas, Roberto
SCIENTIFIC REPORTS
2045-2322 (2021)
DOI /
10.1038/s41598-020-80919-5
Green published, Gold
Mentions
4
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0
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0
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Article
Whole genomic sequencing as a tool for diagnosis of drug and multidrug-resistance tuberculosis in an endemic region in Mexico
Francisco Madrazo-Moya, Carlos; Cancino-Munoz, Irving; Cuevas-Cordoba, Betzaida; Gonzalez-Covarrubias, Vanessa; Barbosa-Amezcua, Martin; Soberon, Xavier; Muniz-Salazar, Raquel; Martinez-Guarneros, Armando; Backer, Claudia; Zarrabal-Meza, Jose; Sampieri-Ram
PLOS ONE
1932-6203 (2019)
DOI /
10.1371/journal.pone.0213046
Gold DOAJ, Green published
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1
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Article
A novel strategy based on genomics and specific PCR reveals how a multidrug-resistant Mycobacterium tuberculosis strain became prevalent in Equatorial Guinea 15 years after its emergence
Perez-Lago, L.; Izco, S.; Herranz, M.; Tudo, G.; Carcelen, M.; Comas, I.; Sierra, O.; Gonzalez-Martin, J.; Ruiz-Serrano, M. J.; Eyene, J.; Bouza, E.; Garcia de Viedma, D.
CLINICAL MICROBIOLOGY AND INFECTION
1198-743X (2017)
DOI /
10.1016/j.cmi.2016.10.006
Green accepted, Bronze
