Computer Science
Listando 13 trabajos del autor/autora 38
Lista de trabajos en el área Computer Science
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Article
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models
Henriques, David; Villaverde, Alejandro F.; Rocha, Miguel; Saez-Rodriguez, Julio; Banga, Julio R.
PLOS COMPUTATIONAL BIOLOGY
1553-734X (2017)
DOI /
10.1371/journal.pcbi.1005379
Green published, Gold other
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39
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Article
Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation
Villaverde, Alejandro F.; Banga, Julio R.
PLOS COMPUTATIONAL BIOLOGY
1553-734X (2017)
DOI /
10.1371/journal.pcbi.1005878
Green published, Gold, Green submitted
Mentions
43
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Article
PEtab-Interoperable specification of parameter estimation problems in systems biology
Schmiester, Leonard; Schaelte, Yannik; Bergmann, Frank T.; Camba, Tacio; Dudkin, Erika; Egert, Janine; Froehlich, Fabian; Fuhrmann, Lara; Hauber, Adrian L.; Kemmer, Svenja; Lakrisenko, Polina; Loos, Carolin; Merkt, Simon; Mueller, Wolfgang; Pathirana, Dila
PLOS COMPUTATIONAL BIOLOGY
1553-734X (2021)
DOI /
10.1371/journal.pcbi.1008646
Gold DOAJ, Green published
Mentions
29
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Parameter estimation in models of biological oscillators: an automated regularised estimation approach
Alan Pitt, Jake; Banga, Julio R.
BMC BIOINFORMATICS
1471-2105 (2019)
DOI /
10.1186/s12859-019-2630-y
Gold DOAJ, Green published
Mentions
21
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Article
Benchmarking optimization methods for parameter estimation in large kinetic models
Villaverde, Alejandro F.; Froehlich, Fabian; Weindl, Daniel; Hasenauer, Jan; Banga, Julio R.
BIOINFORMATICS
1367-4803 (2019)
DOI /
10.1093/bioinformatics/bty736
Green published, Gold other
Mentions
14
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Optimality and identification of dynamic models in systems biology: an inverse optimal control framework
Tsiantis, Nikolaos; Balsa-Canto, Eva; Banga, Julio R.
BIOINFORMATICS
1367-4803 (2018)
DOI /
10.1093/bioinformatics/bty139
Green published, Bronze
Mentions
19
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Using optimal control to understand complex metabolic pathways
Tsiantis, Nikolaos; Banga, Julio R.
BMC BIOINFORMATICS
1471-2105 (2020)
DOI /
10.1186/s12859-020-03808-8
Gold DOAJ, Green published
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9
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Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems
Gabor, Attila; Villaverde, Alejandro F.; Banga, Julio R.
BMC SYSTEMS BIOLOGY
1752-0509 (2017)
DOI /
10.1186/s12918-017-0428-y
Green published, Gold
Mentions
11
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GenSSI 2.0: multi-experiment structural identifiability analysis of SBML models
Ligon, Thomas S.; Frohlich, Fabian; Chis, Oana T.; Banga, Julio R.; Balsa-Canto, Eva; Hasenauer, Jan
BIOINFORMATICS
1367-4803 (2018)
DOI /
10.1093/bioinformatics/btx735
Green published, Gold other
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10
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Article
Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy
Penas, David R.; Gonzalez, Patricia; Egea, Jose A.; Doallo, Ramon; Banga, Julio R.
BMC BIOINFORMATICS
1471-2105 (2017)
DOI /
10.1186/s12859-016-1452-4
Gold DOAJ, Green published
Mentions
8
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Article
PREMER: A Tool to Infer Biological Networks
Villaverde, Alejandro F.; Becker, Kolja; Banga, Julio R.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
1545-5963 (2018)
DOI /
10.1109/tcbb.2017.2758786
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6
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A parallel metaheuristic for large mixed-integer dynamic optimization problems, with applications in computational biology
Penas, David R.; Henriques, David; Gonzalez, Patricia; Doallo, Ramon; Saez-Rodriguez, Julio; Banga, Julio R.
PLOS ONE
1932-6203 (2017)
DOI /
10.1371/journal.pone.0182186
Green published, Green submitted, Gold
Mentions
3
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Article
A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology
Teijeiro, Diego; Pardo, Xoan C.; Penas, David R.; Gonzalez, Patricia; Banga, Julio R.; Doallo, Ramon
CLUSTER COMPUTING-THE JOURNAL OF NETWORKS SOFTWARE TOOLS AND APPLICATIONS
1386-7857 (2017)
DOI /
10.1007/s10586-017-0860-1
