Biology & Biochemistry
Listando 26 trabajos del autor/autora 38
Lista de trabajos en el área Biology & Biochemistry
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Article
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets
Choi, Meena; Carver, Jeremy; Chiva, Cristina; Tzouros, Manuel; Huang, Ting; Tsai, Tsung-Heng; Pullman, Benjamin; Bernhardt, Oliver M.; Huttenhain, Ruth; Teo, Guo Ci; Perez-Riverol, Yasset; Muntel, Jan; Mueller, Maik; Goetze, Sandra; Pavlou, Maria; Verschue
NATURE METHODS
1548-7091 (2020)
DOI /
10.1038/s41592-020-0955-0
Mentions
33
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1
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7
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0
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Article
Unraveling the hidden universe of small proteins in bacterial genomes
Miravet-Verde, Samuel; Ferrar, Tony; Espadas-Garcia, Guadalupe; Mazzolini, Rocco; Gharrab, Anas; Sabido, Eduard; Serrano, Luis; Lluch-Senar, Maria
MOLECULAR SYSTEMS BIOLOGY
1744-4292 (2019)
DOI /
10.15252/msb.20188290
Gold DOAJ, Green published
Mentions
52
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0
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5
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Article
Chromatin capture links the metabolic enzyme AHCY to stem cell proliferation
Aranda, Sergi; Alcaine-Colet, Anna; Blanco, Enrique; Borras, Eva; Caillot, Claire; Sabido, Eduard; Di Croce, Luciano
SCIENCE ADVANCES
2375-2548 (2019)
DOI /
10.1126/sciadv.aav2448
Gold other, Green published
Mentions
46
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1
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Article
IKK alpha Kinase Regulates the DNA Damage Response and Drives Chemo-resistance in Cancer
Colomer, Carlota; Margalef, Pol; Villanueva, Alberto; Vert, Anna; Pecharroman, Irene; Sole, Laura; Gonzalez-Farre, Monica; Alonso, Josune; Montagut, Clara; Martinez-Iniesta, Maria; Bertran, Joan; Borras, Eva; Iglesias, MAR; Sabido, Eduard; Bigas, Anna; Bou
MOLECULAR CELL
1097-2765 (2019)
DOI /
10.1016/j.molcel.2019.05.036
Green published, Hybrid
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18
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2
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Article
SirT7 auto-ADP-ribosylation regulates glucose starvation response through mH2A1
Simonet, Nicolas G.; Thackray, Joshua K.; Vazquez, Berta N.; Ianni, Alessandro; Espinosa-Alcantud, Maria; Morales-Sanfrutos, Julia; Hurtado-Bages, Sarah; Sabido, Eduard; Buschbeck, Marcus; Tischfield, Jay; De La Torre, Carolina; Esteller, Manel; Braun, Tho
SCIENCE ADVANCES
2375-2548 (2020)
DOI /
10.1126/sciadv.aaz2590
Gold DOAJ, Green published
Mentions
32
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2
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Changes in Synaptic Proteins Precede Neurodegeneration Markers in Preclinical Alzheimer's Disease Cerebrospinal Fluid
Lleo, Alberto; Nunez-Llaves, Raul; Alcolea, Daniel; Chiva, Cristina; Balateu-Panos, Daniel; Colom-Cadena, Marti; Gomez-Giro, Gemma; Munoz, Laia; Querol-Vilaseca, Marta; Pegueroles, Jordi; Rami, Lorena; Llado, Albert; Molinuevo, Jose L.; Tainta, Mikel; Clar
MOLECULAR & CELLULAR PROTEOMICS
1535-9476 (2019)
DOI /
10.1074/mcp.ra118.001290
Green published, Hybrid
Mentions
27
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1
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Article
Genome-wide postnatal changes in immunity following fetal inflammatory response
Costa, Daniel; Bonet, Nuria; Sole, Amanda; Gonzalez de Aledo-Castillo, Jose Manuel; Sabido, Eduard; Casals, Ferran; Rovira, Carlota; Nadal, Alfons; Marin, Jose Luis; Cobo, Teresa; Castelo, Robert
FEBS JOURNAL
1742-464X (2020)
DOI /
10.1111/febs.15578
Hybrid, Green submitted, Green published
Mentions
34
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Article
QCloud: A cloud-based quality control system for mass spectrometry-based proteomics laboratories
Chiva, Cristina; Olivella, Roger; Borras, Eva; Espadas, Guadalupe; Pastor, Olga; Sole, Amanda; Sabido, Eduard
PLOS ONE
1932-6203 (2018)
DOI /
10.1371/journal.pone.0189209
Gold other, Green published
Mentions
54
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MSstatsQC 2.0: R/Bioconductor Package for Statistical Quality Control of Mass Spectrometry-Based Proteomics Experiments
Dogu, Eralp; Taheri, Sara Mohammad; Olivella, Roger; Marty, Florian; Lienert, Ian; Reiter, Lukas; Sabido, Eduard; Vitek, Olga
JOURNAL OF PROTEOME RESEARCH
1535-3893 (2019)
DOI /
10.1021/acs.jproteome.8b00732
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3
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0
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2
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Article
Molecular basis for the protective effects of low-density lipoprotein receptor-related protein 1 (LRP1)-derived peptides against LDL aggregation
Benitez-Arnaro, Aleyda; Pallara, Chiara; Nasarre, Laura; Rivas-Urbina, Andrea; Benitez, Sonia; Vea, Angela; Bornachea, Olga; de Gonzalo-Calvo, David; Serra-Mir, Gabriel; Villegas, Sandra; Prades, Roger; Luis Sanchez-Quesada, Jose; Chiva, Cristina; Sabido,
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
0005-2736 (2019)
DOI /
10.1016/j.bbamem.2019.05.003
Bronze, Green submitted
Mentions
9
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What is targeted proteomics? A concise revision of targeted acquisition and targeted data analysis in mass spectrometry
Borras, Eva; Sabido, Eduard
PROTEOMICS
1615-9853 (2017)
DOI /
10.1002/pmic.201700180
Green accepted
Mentions
32
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QCloud2: An Improved Cloud-based Quality-Control System for Mass-Spectrometry-based Proteomics Laboratories
Olivella, Roger; Chiva, Cristina; Serret, Marc; Mancera, Daniel; Cozzuto, Luca; Hermoso, Antoni; Borras, Eva; Espadas, Guadalupe; Morales, Julia; Pastor, Olga; Sole, Amanda; Ponomarenko, Julia; Sabido, Eduard
JOURNAL OF PROTEOME RESEARCH
1535-3893 (2021)
DOI /
10.1021/acs.jproteome.0c00853
Green published, Gold other
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22
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Editorial Material
Quality standards in proteomics research facilities Common standards and quality procedures are essential for proteomics facilities and their users
Chiva, Cristina; Mendes Maia, Teresa; Panse, Christian; Stejskal, Karel; Douche, Thibaut; Matondo, Mariette; Loew, Damarys; Helm, Dominic; Rettel, Mandy; Mechtler, Karl; Impens, Francis; Nanni, Paolo; Shevchenko, Anna; Sabido, Eduard
EMBO REPORTS
1469-221X (2021)
DOI /
10.15252/embr.202152626
Green published, Gold other
Mentions
12
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0
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0
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Article
A Proteomic Approach for Systematic Mapping of Substrates of Human Deubiquitinating Enzymes
Ramirez, Juanma; Prieto, Gorka; Olazabal-Herrero, Anne; Borras, Eva; Fernandez-Vigo, Elvira; Alduntzin, Unai; Osinalde, Nerea; Beaskoetxea, Javier; Lectez, Benoit; Aloria, Kerman; Rodriguez, Jose Antonio; Paradela, Alberto; Sabido, Eduard; Munoz, Javier; C
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
1661-6596 (2021)
DOI /
10.3390/ijms22094851
Green published, Gold
Mentions
11
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0
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Article
Peptide Selection for Targeted Protein Quantitation
Chiva, Cristina; Sabido, Eduard
JOURNAL OF PROTEOME RESEARCH
1535-3893 (2017)
DOI /
10.1021/acs.jproteome.6b00115
Green accepted
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4
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Covalent Histone Modification by an Electrophilic Derivative of the Anti-HIV Drug Nevirapine
Harjivan, Shrika G.; Charneira, Catarina; Martins, Ines L.; Pereira, Sofia A.; Espadas, Guadalupe; Sabido, Eduard; Beland, Frederick A.; Marques, M. Matilde; Antunes, Alexandra M. M.
MOLECULES
(2021)
DOI /
10.3390/molecules26051349
Gold DOAJ, Green published
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9
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Article
Proteomic Profiling of Microtubule Self-organization in M-phase
Rosas-Salvans, Miquel; Cavazza, Tommaso; Espadas, Guadalupe; Sabido, Eduard; Vernos, Isabelle
MOLECULAR & CELLULAR PROTEOMICS
1535-9476 (2018)
DOI /
10.1074/mcp.ra118.000745
Green published, Bronze
Mentions
7
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0
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0
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Proteotoxicity in cardiac amyloidosis: amyloidogenic light chains affect the levels of intracellular proteins in human heart cells
Imperlini, Esther; Gnecchi, Massimiliano; Rognoni, Paola; Sabido, Eduard; Ciuffreda, Maria Chiara; Palladini, Giovanni; Espadas, Guadalupe; Mancuso, Francesco Mattia; Bozzola, Margherita; Malpasso, Giuseppe; Valentini, Veronica; Palladini, Giuseppina; Orru
SCIENTIFIC REPORTS
2045-2322 (2017)
DOI /
10.1038/s41598-017-15424-3
Gold, Green published
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4
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0
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0
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Article
System-Wide Quantitative Proteomics of the Metabolic Syndrome in Mice: Genotypic and Dietary Effects
Terfve, Camille; Sabido, Eduard; Wu, Yibo; Goncalves, Emanuel; Choi, Meena; Vaga, Stefania; Vitek, Olga; Saez-Rodriguez, Julio; Aebersold, Ruedi
JOURNAL OF PROTEOME RESEARCH
1535-3893 (2017)
DOI /
10.1021/acs.jproteome.6b00815
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5
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0
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0
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A multicentric study to evaluate the use of relative retention times in targeted proteomics
Vialas, Vital; Colome-Calls, Nuria; Abian, Joaquin; Aloria, Kerman; Alvarez-Llamas, Gloria; Antunez, Oreto; Arizmendi, Jesus M.; Azkargorta, Mikel; Barcelo-Batllori, Silvia; Barderas, Maria G.; Blanco, Francisco; Ignacio Casal, J.; Casas, Vanessa; De La To
JOURNAL OF PROTEOMICS
1874-3919 (2017)
DOI /
10.1016/j.jprot.2016.10.014
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6
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Article
Molecular characterization of triple negative breast cancer formaldehyde-fixed paraffin-embedded samples by data-independent acquisition proteomics
Garcia-Adrian, Silvia; Trilla-Fuertes, Lucia; Gamez-Pozo, Angelo; Chiva, Cristina; Lopez-Vacas, Rocio; Lopez-Camacho, Elena; Zapater-Moros, Andrea; Lumbreras-Herrera, Maria, I; Hardisson, David; Yebenes, Laura; Zamora, Pilar; Sabido, Eduard; Fresno Vara, J
PROTEOMICS
1615-9853 (2021)
DOI /
10.1002/pmic.202100110
Green submitted
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6
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Article
Evaluation of different peptide fragmentation types and mass analyzers in data-dependent methods using an Orbitrap Fusion Lumos Tribrid mass spectrometer
Espadas, Guadalupe; Borras, Eva; Chiva, Cristina; Sabido, Eduard
PROTEOMICS
1615-9853 (2017)
DOI /
10.1002/pmic.201600416
Green accepted
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5
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Article
The cochaperone CHIP marks Hsp70-and Hsp90-bound substrates for degradation through a very flexible mechanism
Quintana-Gallardo, Lucia; Martin-Benito, Jaime; Marcilla, Miguel; Espadas, Guadalupe; Sabido, Eduard; Maria Valpuesta, Jose
SCIENTIFIC REPORTS
2045-2322 (2019)
DOI /
10.1038/s41598-019-41060-0
Gold, Green published
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4
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0
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A comprehensive proteomics-based interaction screen that links DYRK1A to RNF169 and to the DNA damage response
Roewenstrunk, Julia; Di Vona, Chiara; Chen, Jie; Borras, Eva; Dong, Chao; Arato, Krisztina; Sabido, Eduard; Huen, Michael S. Y.; de la Luna, Susana
SCIENTIFIC REPORTS
2045-2322 (2019)
DOI /
10.1038/s41598-019-42445-x
Gold DOAJ, Green published
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2
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The loss of DHX15 impairs endothelial energy metabolism, lymphatic drainage and tumor metastasis in mice
Ribera, Jordi; Portoles, Irene; Cordoba-Jover, Bernat; Rodriguez-Vita, Juan; Casals, Gregori; Gonzalez-De la Presa, Bernardino; Graupera, Mariona; Solsona-Vilarrasa, Estel; Garcia-Ruiz, Carmen; Fernandez-Checa, Jose C.; Soria, Guadalupe; Tudela, Raul; Este
COMMUNICATIONS BIOLOGY
(2021)
DOI /
10.1038/s42003-021-02722-w
Gold, Green published
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2
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Proteomic study of the membrane components of signalling cascades of Botrytis cinerea controlled by phosphorylation
Escobar-Nino, Almudena; Lineiro, Eva; Amil, Francisco; Carrasco, Rafael; Chiva, Cristina; Fuentes, Carlos; Blanco-Ulate, Barbara; Cantoral Fernandez, Jesus M.; Sabido, Eduard; Javier Fernandez-Acero, Francisco
SCIENTIFIC REPORTS
2045-2322 (2019)
DOI /
10.1038/s41598-019-46270-0
Green published, Gold
