Computer Science
Listando 8 trabajos del autor/autora 37
Lista de trabajos en el área Computer Science
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Article
Data-driven reverse engineering of signaling pathways using ensembles of dynamic models
Henriques, David; Villaverde, Alejandro F.; Rocha, Miguel; Saez-Rodriguez, Julio; Banga, Julio R.
PLOS COMPUTATIONAL BIOLOGY
1553-734X (2017)
DOI /
10.1371/journal.pcbi.1005379
Green published, Gold other
Mentions
39
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Article
Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation
Villaverde, Alejandro F.; Banga, Julio R.
PLOS COMPUTATIONAL BIOLOGY
1553-734X (2017)
DOI /
10.1371/journal.pcbi.1005878
Green published, Gold, Green submitted
Mentions
43
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Article
PEtab-Interoperable specification of parameter estimation problems in systems biology
Schmiester, Leonard; Schaelte, Yannik; Bergmann, Frank T.; Camba, Tacio; Dudkin, Erika; Egert, Janine; Froehlich, Fabian; Fuhrmann, Lara; Hauber, Adrian L.; Kemmer, Svenja; Lakrisenko, Polina; Loos, Carolin; Merkt, Simon; Mueller, Wolfgang; Pathirana, Dila
PLOS COMPUTATIONAL BIOLOGY
1553-734X (2021)
DOI /
10.1371/journal.pcbi.1008646
Gold DOAJ, Green published
Mentions
21
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Article
Benchmarking optimization methods for parameter estimation in large kinetic models
Villaverde, Alejandro F.; Froehlich, Fabian; Weindl, Daniel; Hasenauer, Jan; Banga, Julio R.
BIOINFORMATICS
1367-4803 (2019)
DOI /
10.1093/bioinformatics/bty736
Green published, Gold other
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8
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Article
PREMER: A Tool to Infer Biological Networks
Villaverde, Alejandro F.; Becker, Kolja; Banga, Julio R.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
1545-5963 (2018)
DOI /
10.1109/tcbb.2017.2758786
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9
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Article
Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems
Gabor, Attila; Villaverde, Alejandro F.; Banga, Julio R.
BMC SYSTEMS BIOLOGY
1752-0509 (2017)
DOI /
10.1186/s12918-017-0428-y
Green published, Gold
Mentions
3
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Article
Finding and Breaking Lie Symmetries: Implications for Structural Identifiability and Observability in Biological Modelling
Massonis, Gemma; Villaverde, Alejandro F.
SYMMETRY-BASEL
(2020)
DOI /
10.3390/sym12030469
Gold DOAJ
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2
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Editorial Material
On testing structural identifiability by a simple scaling method: Relying on scaling symmetries can be misleading
Villaverde, Alejandro F.; Massonis, Gemma
PLOS COMPUTATIONAL BIOLOGY
1553-734X (2021)
DOI /
10.1371/journal.pcbi.1009032
Green published, Green submitted, Gold
