Microbiology
Listando 34 trabajos del autor/autora 38
Lista de trabajos en el área Microbiology
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335
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3
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Article
Spindle-shaped viruses infect marine ammoniaoxidizing thaumarchaea
Kim, Jong-Geol; Kim, So-Jeong; Cvirkaite-Krupovic, Virginija; Yu, Woon-Jong; Gwak, Joo-Han; Lopez-Perez, Mario; Rodriguez-Valera, Francisco; Krupovic, Mart; Cho, Jang-Cheon; Rhee, Sung-Keun
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
0027-8424 (2019)
DOI /
10.1073/pnas.1905682116
Green published, Bronze
Mentions
134
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0
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0
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0
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Article
CRISPR analysis suggests that small circular single-stranded DNA smacoviruses infect Archaea instead of humans
Diez-Villasenor, Cesar; Rodriguez-Valera, Francisco
NATURE COMMUNICATIONS
(2019)
DOI /
10.1038/s41467-018-08167-w
Green published, Gold
Mentions
47
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0
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0
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0
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Article
Thousands of Novel Endolysins Discovered in Uncultured Phage Genomes
Fernandez-Ruiz, Iris; Coutinho, Felipe H.; Rodriguez-Valera, Francisco
FRONTIERS IN MICROBIOLOGY
(2018)
DOI /
10.3389/fmicb.2018.01033
Gold DOAJ, Green published
Mentions
29
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0
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2
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0
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Article
Single-virus genomics reveals hidden cosmopolitan and abundant viruses
Martinez-Hernandez, Francisco; Fornas, Oscar; Gomez, Monica Lluesma; Bolduc, Benjamin; Jose de la Cruz Pena, Maria; Martinez, Joaquin Martinez; Anton, Josefa; Gasol, Josep M.; Rosselli, Riccardo; Rodriguez-Valera, Francisco; Sullivan, Matthew B.; Acinas, S
NATURE COMMUNICATIONS
(2017)
DOI /
10.1038/ncomms15892
Green published, Gold
Mentions
41
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0
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1
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0
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Article
Single-cell genomics uncover Pelagibacter as the putative host of the extremely abundant uncultured 37-F6 viral population in the ocean
Martinez-Hernandez, Francisco; Fornas, Oscar; Lluesma Gomez, Monica; Garcia-Heredia, Inmaculada; Maestre-Carballa, Lucia; Lopez-Perez, Mario; Haro-Moreno, Jose M.; Rodriguez-Valera, Francisco; Martinez-Garcia, Manuel
ISME JOURNAL
1751-7362 (2019)
DOI /
10.1038/s41396-018-0278-7
Bronze, Green published
Mentions
41
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0
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0
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0
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Article
Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics
Haro-Moreno, Jose M.; Rodriguez-Valera, Francisco; Lopez-Perez, Mario
FRONTIERS IN MICROBIOLOGY
(2019)
DOI /
10.3389/fmicb.2019.02926
Gold, Green published
Mentions
46
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0
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0
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0
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Article
Trends of Microdiversity Reveal Depth-Dependent Evolutionary Strategies of Viruses in the Mediterranean
Hernandes Coutinho, Felipe; Rosselli, Riccardo; Rodriguez-Valera, Francisco
MSYSTEMS
2379-5077 (2019)
DOI /
10.1128/msystems.00554-19
Green published, Gold
Mentions
63
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0
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0
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0
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Article
Enhanced Recovery of Microbial Genes and Genomes From a Marine Water Column Using Long-Read Metagenomics
Haro-Moreno, Jose M.; Lopez-Perez, Mario; Rodriguez-Valera, Francisco
FRONTIERS IN MICROBIOLOGY
(2021)
DOI /
10.3389/fmicb.2021.708782
Gold, Green published
Mentions
41
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0
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0
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0
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Article
The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling
Mehrshad, Maliheh; Rodriguez-Valera, Francisco; Amoozegar, Mohammad Ali; Lopez-Garcia, Purificacion; Ghai, Rohit
ISME JOURNAL
1751-7362 (2018)
DOI /
10.1038/s41396-017-0009-5
Gold other, Green published
Mentions
34
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2
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0
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0
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Article
Alteromonas Myovirus V22 Represents a New Genus of Marine Bacteriophages Requiring a Tail Fiber Chaperone for Host Recognition
Gonzalez-Serrano, Rafael; Dunne, Matthew; Rosselli, Riccardo; Martin-Cuadrado, Ana-Belen; Grosboillot, Virginie; Zinsli, Lea, V; Roda-Garcia, Juan J.; Loessner, Martin J.; Rodriguez-Valera, Francisco
MSYSTEMS
2379-5077 (2020)
DOI /
10.1128/msystems.00217-20
Green published, Gold
Mentions
45
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0
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0
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0
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Article
The Evolutionary Success of the Marine Bacterium SAR11 Analyzed through a Metagenomic Perspective
Lopez-Perez, Mario; Haro-Moreno, Jose M.; Hernandes Coutinho, Felipe; Martinez-Garcia, Manuel; Rodriguez-Valera, Francisco
MSYSTEMS
2379-5077 (2020)
DOI /
10.1128/msystems.00605-20
Green published, Gold
Mentions
29
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0
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0
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0
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Article
New viral biogeochemical roles revealed through metagenomic analysis of Lake Baikal
Coutinho, F. H.; Cabello-Yeves, P. J.; Gonzalez-Serrano, R.; Rosselli, R.; Lopez-Perez, M.; Zemskaya, T. I.; Zakharenko, A. S.; Ivanov, V. G.; Rodriguez-Valera, F.
MICROBIOME
2049-2618 (2020)
DOI /
10.1186/s40168-020-00936-4
Green submitted, Gold, Green published
Mentions
24
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0
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0
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0
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Article
Metagenomic recovery of phage genomes of uncultured freshwater actinobacteria
Ghai, Rohit; Mehrshad, Maliheh; Megumi Mizuno, Carolina; Rodriguez-Valera, Francisco
ISME JOURNAL
1751-7362 (2017)
DOI /
10.1038/ismej.2016.110
Green published, Bronze
Mentions
21
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0
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0
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0
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Article
Marine-freshwater prokaryotic transitions require extensive changes in the predicted proteome
Cabello-Yeves, Pedro J.; Rodriguez-Valera, Francisco
MICROBIOME
2049-2618 (2019)
DOI /
10.1186/s40168-019-0731-5
Gold DOAJ, Green published
Mentions
20
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0
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0
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0
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Article
The microbiome of the Black Sea water column analyzed by shotgun and genome centric metagenomics
Cabello-Yeves, Pedro J.; Callieri, Cristiana; Picazo, Antonio; Mehrshad, Maliheh; Haro-Moreno, Jose M.; Roda-Garcia, Juan J.; Dzhembekova, Nina; Slabakova, Violeta; Slabakova, Nataliya; Moncheva, Snejana; Rodriguez-Valera, Francisco
ENVIRONMENTAL MICROBIOME
(2021)
DOI /
10.1186/s40793-021-00374-1
Green submitted, Gold, Green published
Mentions
30
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0
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0
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0
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Article
Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen Vibrio vulnificus: From Genotype to Ecotype
Lopez-Perez, Mario; Jayakumar, Jane M.; Haro-Moreno, Jose M.; Zaragoza-Solas, Asier; Reddi, Geethika; Rodriguez-Valera, Francisco; Shapiro, Orr H.; Alam, Munirul; Almagro-Moreno, Salvador
MBIO
2150-7511 (2019)
DOI /
10.1128/mbio.02852-18
Green published, Gold
Mentions
23
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0
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0
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0
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Article
Genomes of the "Candidatus Actinomarinales" Order: Highly Streamlined Marine Epipelagic Actinobacteria
Lopez-Perez, Mario; Haro-Moreno, Jose M.; Iranzo, Jaime; Rodriguez-Valera, Francisco
MSYSTEMS
2379-5077 (2020)
DOI /
10.1128/msystems.01041-20
Green published, Gold
Mentions
15
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0
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0
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0
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Article
New insights into marine group III Euryarchaeota, from dark to light
Haro-Moreno, Jose M.; Rodriguez-Valera, Francisco; Lopez-Garcia, Purificacion; Moreira, David; Martin-Cuadrado, Ana-Belen
ISME JOURNAL
1751-7362 (2017)
DOI /
10.1038/ismej.2016.188
Green published, Bronze
Mentions
13
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0
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0
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0
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Article
Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya
Kim, So-Jeong; Kim, Jong-Geol; Lee, Sang-Hoon; Park, Soo-Je; Gwak, Joo-Han; Jung, Man-Young; Chung, Won-Hyung; Yang, Eun-Jin; Park, Jisoo; Jung, Jinyoung; Hahn, Yoonsoo; Cho, Jang-Cheon; Madsen, Eugene L.; Rodriguez-Valera, Francisco; Hyun, Jung-Ho; Rhee,
MICROBIOME
2049-2618 (2019)
DOI /
10.1186/s40168-019-0643-4
Gold DOAJ, Green published
Mentions
13
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0
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0
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0
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Article
Wild eel microbiome reveals that skin mucus of fish could be a natural niche for aquatic mucosal pathogen evolution
Carda-Dieguez, Miguel; Ghai, Rohit; Rodriguez-Valera, Francisco; Amaro, Carmen
MICROBIOME
2049-2618 (2017)
DOI /
10.1186/s40168-017-0376-1
Gold DOAJ, Green published
Mentions
10
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0
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0
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0
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Article
Novel Synechococcus Genomes Reconstructed from Freshwater Reservoirs
Cabello-Yeves, Pedro J.; Haro-Moreno, Jose M.; Martin-Cuadrado, Ana-Belen; Ghai, Rohit; Picazo, Antonio; Camacho, Antonio; Rodriguez-Valera, Francisco
FRONTIERS IN MICROBIOLOGY
(2017)
DOI /
10.3389/fmicb.2017.01151
Green published, Gold
Mentions
17
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0
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0
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0
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Article
Uncovering a hidden diversity: optimized protocols for the extraction of dsDNA bacteriophages from soil
Goller, Pauline C.; Haro-Moreno, Jose M.; Rodriguez-Valera, Francisco; Loessner, Martin J.; Gomez-Sanz, Elena
MICROBIOME
2049-2618 (2020)
DOI /
10.1186/s40168-020-0795-2
Green submitted, Green published, Gold
Mentions
24
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0
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0
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0
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Article
Ecogenomics of the SAR11 clade
Haro-Moreno, Jose M.; Rodriguez-Valera, Francisco; Rosselli, Riccardo; Martinez-Hernandez, Francisco; Roda-Garcia, Juan J.; Gomez, Monica Lluesma; Fornas, Oscar; Martinez-Garcia, Manuel; Lopez-Perez, Mario
ENVIRONMENTAL MICROBIOLOGY
1462-2912 (2019)
DOI /
10.1111/1462-2920.14896
Hybrid, Green published
Mentions
16
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0
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0
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0
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Article
Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise
Hou, Shengwei; Lopez-Perez, Mario; Pfreundt, Ulrike; Belkin, Natalia; Stueber, Kurt; Huettel, Bruno; Reinhardt, Richard; Berman-Frank, Ilana; Rodriguez-Valera, Francisco; Hess, Wolfgang R.
ISME JOURNAL
1751-7362 (2018)
DOI /
10.1038/s41396-017-0034-4
Green published, Gold other
Mentions
20
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0
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0
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Article
Genomes of Novel Microbial Lineages Assembled from the Sub-Ice Waters of Lake Baikal
Cabello-Yeves, Pedro J.; Zemskaya, Tamara I.; Rosselli, Riccardo; Coutinho, Felipe H.; Zakharenko, Alexandra S.; Blinov, Vadim V.; Rodriguez-Valera, Francisco
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
0099-2240 (2018)
DOI /
10.1128/aem.02132-17
Green published, Bronze
Mentions
19
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0
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0
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0
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Article
Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes
Lopez-Perez, Mario; Haro-Moreno, Jose M.; de la Torre, Jose R.; Rodriguez-Valera, Francisco
ENVIRONMENTAL MICROBIOLOGY
1462-2912 (2019)
DOI /
10.1111/1462-2920.14462
Green published
Mentions
19
Twitter
0
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0
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Article
Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment
Haro-Moreno, Jose M.; Lopez-Perez, Mario; de la Torre, Jose R.; Picazo, Antonio; Camacho, Antonio; Rodriguez-Valera, Francisco
MICROBIOME
2049-2618 (2018)
DOI /
10.1186/s40168-018-0513-5
Green published, Gold
Mentions
8
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0
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0
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0
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Article
Transcriptome analysis of Haloquadratum walsbyi: vanity is but the surface
Bolhuis, Henk; Martin-Cuadrado, Ana Belen; Rosselli, Riccardo; Pasic, Lejla; Rodriguez-Valera, Francisco
BMC GENOMICS
1471-2164 (2017)
DOI /
10.1186/s12864-017-3892-2
Gold DOAJ, Green published
Mentions
12
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0
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0
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0
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Article
Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments
Zaragoza-Solas, Asier; Rodriguez-Valera, Francisco; Lopez-Perez, Mario
MSYSTEMS
2379-5077 (2020)
DOI /
10.1128/msystems.00905-19
Gold, Green published
Mentions
12
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0
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0
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0
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Article
Reconstruction of Diverse Verrucomicrobial Genomes from Metagenome Datasets of Freshwater Reservoirs
Cabello-Yeves, Pedro J.; Ghai, Rohit; Mehrshad, Maliheh; Picazo, Antonio; Camacho, Antonio; Rodriguez-Valera, Francisco
FRONTIERS IN MICROBIOLOGY
(2017)
DOI /
10.3389/fmicb.2017.02131
Gold, Green published
Mentions
10
Twitter
0
Wikipedia
0
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0
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Article
Ecological and genomic features of two widespread freshwater picocyanobacteria
Cabello-Yeves, Pedro J.; Picazo, Antonio; Camacho, Antonio; Callieri, Cristiana; Rosselli, Riccardo; Roda-Garcia, Juan J.; Coutinho, Felipe H.; Rodriguez-Valera, Francisco
ENVIRONMENTAL MICROBIOLOGY
1462-2912 (2018)
DOI /
10.1111/1462-2920.14377
Mentions
10
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0
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0
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0
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Article
Genomic Comparison and Spatial Distribution of DifferentSynechococcusPhylotypes in the Black Sea
Di Cesare, Andrea; Dzhembekova, Nina; Cabello-Yeves, Pedro J.; Eckert, Ester M.; Slabakova, Violeta; Slabakova, Nataliya; Peneva, Elisaveta; Bertoni, Roberto; Corno, Gianluca; Salcher, Michaela M.; Kamburska, Lyudmila; Bertoni, Filippo; Rodriguez-Valera, F
FRONTIERS IN MICROBIOLOGY
(2020)
DOI /
10.3389/fmicb.2020.01979
Gold, Green published
Mentions
9
Twitter
0
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0
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0
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Review
Microorganisms of Lake Baikal-the deepest and most ancient lake on Earth
Zemskaya, Tamara, I; Cabello-Yeves, Pedro J.; Pavlova, Olga N.; Rodriguez-Valera, Francisco
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
0175-7598 (2020)
DOI /
10.1007/s00253-020-10660-6
Mentions
3
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0
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0
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0
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Article
Phylogenomics of SAR116 Clade Reveals Two Subclades with Different Evolutionary Trajectories and an Important Role in the Ocean Sulfur Cycle
Roda-Garcia, Juan J.; Haro-Moreno, Jose M.; Huschet, Lukas A.; Rodriguez-Valera, Francisco; Lopez-Perez, Mario
MSYSTEMS
2379-5077 (2021)
DOI /
10.1128/msystems.00944-21
Green published, Gold, Green submitted
