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Mutational signatures impact the evolution of anti-EGFR antibody resistance in colorectal cancer

Woolston, Andrew; Barber, Louise J.; Griffiths, Beatrice; Pich, Oriol; Lopez-Bigas, Nuria; Matthews, Nik; Rao, Sheela; Watkins, David; Chau, Ian; Starling, Naureen; Cunningham, David; Gerlinger, Marco

NATURE ECOLOGY & EVOLUTION
2021
VL / 5 - BP / 1024 - EP / +
abstract
Anti-EGFR antibodies such as cetuximab are active against KRAS/NRAS wild-type colorectal cancers (CRCs), but acquired resistance invariably evolves. It is unknown which mutational mechanisms enable resistance evolution and whether adaptive mutagenesis (a transient cetuximab-induced increase in mutation generation) contributes in patients. Here, we investigate these questions in exome sequencing data from 42 baseline and progression biopsies from cetuximab-treated CRCs. Mutation loads did not increase from baseline to progression, and evidence for a contribution of adaptive mutagenesis was limited. However, the chemotherapy-induced mutational signature SBS17b was the main contributor of specific KRAS/NRAS and EGFR driver mutations that are enriched at acquired resistance. Detectable SBS17b activity before treatment predicted shorter progression-free survival and the evolution of these specific mutations during subsequent cetuximab treatment. This result suggests that chemotherapy mutagenesis can accelerate resistance evolution. Mutational signatures may be a new class of cancer evolution predictor. Analysis of exome sequencing data from 42 baseline and progression biopsies from cetuximab-treated colorectal cancers reveals limited adaptive mutagenesis but shows a chemotherapy-induced mutational signature that is the main contributor of specific driver mutations that are enriched at acquired resistance.

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